ATLAS of biochemistry: a repository of all possible biochemical reactions for synthetic biology and metabolic engineering studies N Hadadi, J Hafner, A Shajkofci, A Zisaki, V Hatzimanikatis ACS synthetic biology 5 (10), 1155-1166, 2016 | 159 | 2016 |
ASAP: a web-based platform for the analysis and interactive visualization of single-cell RNA-seq data V Gardeux, FPA David, A Shajkofci, PC Schwalie, B Deplancke Bioinformatics 33 (19), 3123-3125, 2017 | 120 | 2017 |
Spatially-variant CNN-based point spread function estimation for blind deconvolution and depth estimation in optical microscopy A Shajkofci, M Liebling IEEE Transactions on Image Processing 29, 5848-5861, 2020 | 46 | 2020 |
Correction of human forehead temperature variations measured by non-contact infrared thermometer A Shajkofci IEEE Sensors Journal 22 (17), 16750-16755, 2021 | 27 | 2021 |
Semi-blind spatially-variant deconvolution in optical microscopy with local point spread function estimation by use of convolutional neural networks A Shajkofci, M Liebling 2018 25th IEEE International Conference on Image Processing (ICIP), 3818-3822, 2018 | 25 | 2018 |
DeepFocus: a few-shot microscope slide auto-focus using a sample invariant CNN-based sharpness function A Shajkofci, M Liebling 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI), 164-168, 2020 | 6 | 2020 |
Method and device for biometric vascular recognition and/or identification LS MOMO, LC TORRES, S Marcel, A Anjos, M Liebling, A Shajkofci, ... US Patent 11,200,401, 2021 | 4 | 2021 |
Free annotated data for deep learning in microscopy? a hitchhiker’s guide A Shajkofci, M Liebling Photoniques, 30-33, 2020 | 1 | 2020 |
Domestic hot-water boilers harbour active thermophilic bacterial communities distinctly different from those in the cold-water supply T Egli, L Campostrini, M Leifels, HP Füchslin, C Kolm, C Dan, ... Water Research, 121109, 2024 | | 2024 |
Estimating Nonplanar Flow From 2D Motion-Blurred Widefield Microscopy Images Via Deep Learning A Shajkofci, M Liebling 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), 221-224, 2021 | | 2021 |
Weakly Supervised Deep Learning Methods for Biomicroscopy A Shajkofci EPFL, 2021 | | 2021 |
Advances in Deep Learning in Microscopy A Shajkofci, M Liebling | | 2020 |
“ATLAS of Biochemistry”: A repository of all possible biochemical reactions for synthetic biology, metabolic engineering and metabolomics studies JM Hafner, N Hadadi, A Shajkofci, A Zisaki, V Hatzimanikatis Metabolic Engineering 11, 2016 | | 2016 |