Jaap Heringa

Cited by

	All	Since 2016
Citations	18116	8946
h-index	45	27
i10-index	97	63

2500

1250

625

1875

199419951996199719981999200020012002200320042005200620072008200920102011201220132014201520162017201820192020202149 46 54 78 63 91 71 117 188 274 424 522 600 642 682 666 702 709 701 755 781 772 834 1138 1459 2011 2496 914

Public access

View all

17 articles

0 articles

available

not available

Based on funding mandates

Co-authors

Anton FeenstraAssistant professor of Bioinformatics, IBIVU Centre for Integrative Bioinformatics, VU UniversityVerified email at vu.nl
Sanne AbelnAssistant ProfessorVerified email at vu.nl
des higginsUniversity College DublinVerified email at ucd.ie
Cedric NotredamePrincipal Investigator, Centre For Genomic Regulation CRG, BarcelonaVerified email at crg.eu
Punto BawonoThe Centre for Integrative Bioinformatics VU (IBIVU)Verified email at vu.nl
Nicola BonzanniVU University AmsterdamVerified email at vu.nl
Kuang LinNDPH, Oxford UniversityVerified email at ndph.ox.ac.uk
Jens KleinjungSosei HeptaresVerified email at jkleinj.eu
Elena MarchioriRadboud UniversityVerified email at cs.ru.nl
William R TaylorDivision head, Mathematical Biology, National Institute for Medical Research, UKVerified email at nimr.mrc.ac.uk
Gunnar W. KlauHeinrich Heine University DüsseldorfVerified email at hhu.de
Wan FokkinkProfessor of Computer Science, Vrije Universiteit AmsterdamVerified email at vu.nl
Mohammed El-KebirAssistant ProfessorVerified email at illinois.edu
Qingzhen Hou3BIO-BioInfo - BioModeling, BioInformatics & BioProcesses, Université Libre de BruxellesVerified email at ulb.ac.be
Ali MaySenior Associate Scientist at DSMVerified email at vu.nl
Gerrit A Meijerprofessor of oncologic pathology, Netherlands Cancer Institute, AmsterdamVerified email at nki.nl
Niklas BlombergDirector, ELIXIRVerified email at ebi.ac.uk
Toby GibsonEMBLVerified email at embl.de
Henri BalVU University AmsterdamVerified email at cs.vu.nl
Bertie GottgensProfessor of Molecular Haematology, University of CambridgeVerified email at cam.ac.uk

Jaap Heringa

Professor of Bioinformatics, Vrije Universiteit Amsterdam

Verified email at vu.nl

Bioinformatics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
T-Coffee: A novel method for fast and accurate multiple sequence alignment C Notredame, DG Higgins, J Heringa Journal of molecular biology 302 (1), 205-217, 2000	7406	2000
The FAIR Guiding Principles for scientific data management and stewardship MD Wilkinson, M Dumontier, IJJ Aalbersberg, G Appleton, M Axton, ... Scientific data 3 (1), 1-9, 2016	4232	2016
PRALINE: a multiple sequence alignment toolbox that integrates homology-extended and secondary structure information VA Simossis, J Heringa Nucleic acids research 33 (suppl_2), W289-W294, 2005	461	2005
An analysis of protein domain linkers: their classification and role in protein folding RA George, J Heringa Protein Engineering, Design and Selection 15 (11), 871-879, 2002	403	2002
A simple and fast secondary structure prediction method using hidden neural networks K Lin, VA Simossis, WR Taylor, J Heringa Bioinformatics 21 (2), 152-159, 2005	321	2005
The KH domain occurs in a diverse set of RNA‐binding proteins that include the antiterminator NusA and is probably involved in binding to nucleic acid TJ Gibson, JD Thompson, J Heringa FEBS letters 324 (3), 361-366, 1993	239	1993
’t Hoen PAC MD Wilkinson, M Dumontier, IJ Aalbersberg, G Appleton, M Axton, A Baak, ... Hooft R, Kuhn T, Kok R, Kok J, Lusher SJ, Martone ME, Mons A, Packer AL …, 2016	188	2016
Two strategies for sequence comparison: profile-preprocessed and secondary structure-induced multiple alignment J Heringa Computers & chemistry 23 (3-4), 341-364, 1999	182	1999
General secretion signal for the mycobacterial type VII secretion pathway MH Daleke, R Ummels, P Bawono, J Heringa, ... Proceedings of the National Academy of Sciences 109 (28), 11342-11347, 2012	166	2012
Interaction of transmembrane helices by a knobs‐into‐holes packing characteristic of soluble coiled coils D Langosch, J Heringa Proteins: Structure, Function, and Bioinformatics 31 (2), 150-159, 1998	162	1998
Tracking repeats using significance and transitivity R Szklarczyk, J Heringa Bioinformatics 20 (suppl_1), i311-i317, 2004	146	2004
Homology-extended sequence alignment VA Simossis, J Kleinjung, J Heringa Nucleic acids research 33 (3), 816-824, 2005	126	2005
Protein secondary structure prediction W Pirovano, J Heringa Data Mining Techniques for the Life Sciences, 327-348, 2010	123	2010
The ontogeny of a dominance hierarchy in colonies of the bumblebee Bombus terrestris (Hymenoptera, Apidae) A Van Doorn, J Heringa Insectes sociaux 33 (1), 3-25, 1986	119	1986
Side-chain clusters in protein structures and their role in protein folding J Heringa, P Argos Journal of molecular biology 220 (1), 151-171, 1991	117	1991
PRALINE™: a strategy for improved multiple alignment of transmembrane proteins W Pirovano, KA Feenstra, J Heringa Bioinformatics 24 (4), 492-497, 2008	113	2008
SnapDRAGON: a method to delineate protein structural domains from sequence data RA George, J Heringa Journal of molecular biology 316 (3), 839-851, 2002	113	2002
A simple and fast approach to prediction of protein secondary structure from multiply aligned sequences with accuracy above 70% PK Mehta, J Heringa, P Argos Protein Science 4 (12), 2517-2525, 1995	110	1995
Three-dimensional domain duplication, swapping and stealing J Heringa, WR Taylor Current opinion in structural biology 7 (3), 416-421, 1997	107	1997
KH domains within the FMR1 sequence suggest that fragile X syndrome stems from a defect in RNA metabolism TJ Gibson, PM Rice, JD Thompson, J Heringa Trends in biochemical sciences 18 (9), 331-333, 1993	92	1993

The system can't perform the operation now. Try again later.

Articles 1–20

Citations per year

Duplicate citations

Merged citations

Add co-authorsCo-authors

Upload PDF

Follow this author

Cited by

Co-authors