A whole-genome assembly of Drosophila EW Myers, GG Sutton, AL Delcher, IM Dew, DP Fasulo, MJ Flanigan, ... Science 287 (5461), 2196-2204, 2000 | 2168 | 2000 |
DNA sequence quality trimming and vector removal HH Chou, MH Holmes Bioinformatics 17 (12), 1093-1104, 2001 | 610 | 2001 |
Simple systems that exhibit self-directed replication JA Reggia, SL Armentrout, HH Chou, Y Peng Science 259 (5099), 1282-1287, 1993 | 226 | 1993 |
Lucy2: an interactive DNA sequence quality trimming and vector removal tool S Li, HH Chou Bioinformatics 20 (16), 2865-2866, 2004 | 152 | 2004 |
Emergence of self-replicating structures in a cellular automata space HH Chou, JA Reggia Physica D: Nonlinear Phenomena 110 (3-4), 252-276, 1997 | 149 | 1997 |
Picky: oligo microarray design for large genomes HH Chou, AP Hsia, DL Mooney, PS Schnable Bioinformatics 20 (17), 2893-2902, 2004 | 136 | 2004 |
Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy KH Jung, C Dardick, LE Bartley, P Cao, J Phetsom, P Canlas, YS Seo, ... PLoS One 3 (10), e3337, 2008 | 125 | 2008 |
Problem solving during artificial selection of self-replicating loops HH Chou, JA Reggia Physica D: Nonlinear Phenomena 115 (3-4), 293-312, 1998 | 84 | 1998 |
Nearly Identical Paralogs: Implications for Maize (Zea mays L.) Genome Evolution SJ Emrich, L Li, TJ Wen, MD Yandeau-Nelson, Y Fu, L Guo, HH Chou, ... Genetics 175 (1), 429-439, 2007 | 77 | 2007 |
A two-genome microarray for the rice pathogens Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola and its use in the discovery of a difference in their regulation of … YS Seo, M Sriariyanun, L Wang, J Pfeiff, J Phetsom, Y Lin, KH Jung, ... BMC microbiology 8, 1-12, 2008 | 58 | 2008 |
Self-replicating structures: evolution, emergence, and computation JA Reggia, JD Lohn, HH Chou Artificial Life 4 (3), 283-302, 1998 | 37 | 1998 |
Cellular automata models of self-replicating systems JA Reggia, HH Chou, JD Lohn Advances in computers 47, 141-183, 1998 | 29 | 1998 |
Combinatorial RNA interference therapy prevents selection of pre-existing HBV variants in human liver chimeric mice YM Shih, CP Sun, HH Chou, TH Wu, CC Chen, PY Wu, YC Enya Chen, ... Scientific reports 5 (1), 15259, 2015 | 25 | 2015 |
Shared probe design and existing microarray reanalysis using PICKY HH Chou BMC bioinformatics 11, 1-14, 2010 | 24 | 2010 |
The Trend cellular automata programming environment HH Chou, W Huang, JA Reggia Simulation 78 (2), 59-75, 2002 | 21 | 2002 |
Efficient combination of multiple word models for improved sequence comparison X Huang, L Ye, HH Chou, IH Yang, KM Chao Bioinformatics 20 (16), 2529-2533, 2004 | 15 | 2004 |
An extended cellular space method for simulating autocatalytic oligonucleotides HH Chou, JA Reggia, R Navarro-Gonzalez, J Wu Computers & chemistry 18 (1), 33-43, 1994 | 12 | 1994 |
Rational design of high-number dsDNA fragments based on thermodynamics for the construction of full-length genes in a single reaction BS Birla, HH Chou PLoS One 10 (12), e0145682, 2015 | 11 | 2015 |
Whole-genome thermodynamic analysis reduces siRNA off-target effects X Chen, P Liu, HH Chou PLoS One 8 (3), e58326, 2013 | 11 | 2013 |
Thermodynamically optimal whole-genome tiling microarray design and validation H Cho, HH Chou BMC Research Notes 9, 1-12, 2016 | 10 | 2016 |