Molecule edit graph attention network: modeling chemical reactions as sequences of graph edits M Sacha, M Błaz, P Byrski, P Dabrowski-Tumanski, M Chrominski, ...
Journal of Chemical Information and Modeling 61 (7), 3273-3284, 2021
133 2021 Topological knots and links in proteins P Dabrowski-Tumanski, JI Sulkowska
Proceedings of the National Academy of Sciences 114 (13), 3415-3420, 2017
127 2017 KnotProt 2.0: a database of proteins with knots and other entangled structures P Dabrowski-Tumanski, P Rubach, D Goundaroulis, J Dorier, P Sułkowski, ...
Nucleic acids research 47 (D1), D367-D375, 2019
99 2019 Complex lasso: new entangled motifs in proteins W Niemyska, P Dabrowski-Tumanski, M Kadlof, E Haglund, P Sułkowski, ...
Scientific reports 6 (1), 36895, 2016
80 2016 In search of functional advantages of knots in proteins P Dabrowski-Tumanski, A Stasiak, JI Sulkowska
PloS one 11 (11), e0165986, 2016
70 2016 Topoly: Python package to analyze topology of polymers P Dabrowski-Tumanski, P Rubach, W Niemyska, BA Gren, JI Sulkowska
Briefings in Bioinformatics 22 (3), bbaa196, 2021
61 2021 LassoProt: server to analyze biopolymers with lassos P Dabrowski-Tumanski, W Niemyska, P Pasznik, JI Sulkowska
Nucleic acids research 44 (W1), W383-W389, 2016
59 2016 To tie or not to tie? That is the question P Dabrowski-Tumanski, JI Sulkowska
Polymers 9 (9), 454, 2017
58 2017 LinkProt: a database collecting information about biological links P Dabrowski-Tumanski, AI Jarmolinska, W Niemyska, EJ Rawdon, ...
Nucleic acids research, gkw976, 2016
49 2016 Protein knotting by active threading of nascent polypeptide chain exiting from the ribosome exit channel P Dabrowski-Tumanski, M Piejko, S Niewieczerzal, A Stasiak, ...
The Journal of Physical Chemistry B 122 (49), 11616-11625, 2018
41 2018 The exclusive effects of chaperonin on the behavior of proteins with 52 knot Y Zhao, P Dabrowski-Tumanski, S Niewieczerzal, JI Sulkowska
PLoS computational biology 14 (3), e1005970, 2018
31 2018 Prediction of the optimal set of contacts to fold the smallest knotted protein P Dabrowski-Tumanski, AI Jarmolinska, JI Sulkowska
Journal of Physics: Condensed Matter 27 (35), 354109, 2015
29 2015 Efficient and rapid synthesis of nucleoside diphosphate sugars from nucleoside phosphorimidazolides P Dabrowski‐Tumanski, J Kowalska, J Jemielity
European Journal of Organic Chemistry 2013 (11), 2147-2154, 2013
24 2013 PyLasso: a PyMOL plugin to identify lassos AM Gierut, W Niemyska, P Dabrowski-Tumanski, P Sułkowski, ...
Bioinformatics 33 (23), 3819-3821, 2017
23 2017 P Dabrowski-Tumanski, D Goundaroulis, A Stasiak, JI Sulkowska
arXiv preprint arXiv:1908.05919, 2019
15 2019 GapRepairer: a server to model a structural gap and validate it using topological analysis AI Jarmolinska, M Kadlof, P Dabrowski-Tumanski, JI Sulkowska
Bioinformatics 34 (19), 3300-3307, 2018
15 2018 PyLink: a PyMOL plugin to identify links AM Gierut, P Dabrowski-Tumanski, W Niemyska, KC Millett, JI Sulkowska
Bioinformatics 35 (17), 3166-3168, 2019
13 2019 Genus trace reveals the topological complexity and domain structure of biomolecules S Zając, C Geary, ES Andersen, P Dabrowski-Tumanski, JI Sulkowska, ...
Scientific Reports 8 (1), 17537, 2018
9 2018 Statistical properties of lasso-shape polymers and their implications for complex lasso proteins function P Dabrowski-Tumanski, B Gren, JI Sulkowska
Polymers 11 (4), 707, 2019
8 2019 Alphafold blindness to topological barriers affects its ability to correctly predict proteins’ topology P Dabrowski-Tumanski, A Stasiak
Molecules 28 (22), 7462, 2023
6 2023 
Joanna SułkowskaWarsaw University, Centre of New TechnologiesZweryfikowany adres z cent.uw.edu.pl
