Pawel Dabrowski-Tumanski
Pawel Dabrowski-Tumanski
Cardinal Stefan Wyszynski University
Zweryfikowany adres z uksw.edu.pl
Tytuł
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Topological knots and links in proteins
P Dabrowski-Tumanski, JI Sulkowska
Proceedings of the National Academy of Sciences 114 (13), 3415-3420, 2017
742017
Complex lasso: new entangled motifs in proteins
W Niemyska, P Dabrowski-Tumanski, M Kadlof, E Haglund, P Sułkowski, ...
Scientific reports 6 (1), 1-10, 2016
482016
LassoProt: server to analyze biopolymers with lassos
P Dabrowski-Tumanski, W Niemyska, P Pasznik, JI Sulkowska
Nucleic acids research 44 (W1), W383-W389, 2016
382016
To tie or not to tie? That is the question
P Dabrowski-Tumanski, JI Sulkowska
Polymers 9 (9), 454, 2017
372017
In search of functional advantages of knots in proteins
P Dabrowski-Tumanski, A Stasiak, JI Sulkowska
PloS one 11 (11), e0165986, 2016
362016
KnotProt 2.0: a database of proteins with knots and other entangled structures
P Dabrowski-Tumanski, P Rubach, D Goundaroulis, J Dorier, P Sułkowski, ...
Nucleic acids research 47 (D1), D367-D375, 2019
352019
LinkProt: a database collecting information about biological links
P Dabrowski-Tumanski, AI Jarmolinska, W Niemyska, EJ Rawdon, ...
Nucleic acids research, gkw976, 2016
332016
Prediction of the optimal set of contacts to fold the smallest knotted protein
P Dabrowski-Tumanski, AI Jarmolinska, JI Sulkowska
Journal of Physics: Condensed Matter 27 (35), 354109, 2015
232015
Protein knotting by active threading of nascent polypeptide chain exiting from the ribosome exit channel
P Dabrowski-Tumanski, M Piejko, S Niewieczerzal, A Stasiak, ...
The Journal of Physical Chemistry B 122 (49), 11616-11625, 2018
182018
PyLasso: a PyMOL plugin to identify lassos
AM Gierut, W Niemyska, P Dabrowski-Tumanski, P Sułkowski, ...
Bioinformatics 33 (23), 3819-3821, 2017
182017
The exclusive effects of chaperonin on the behavior of proteins with 52 knot
Y Zhao, P Dabrowski-Tumanski, S Niewieczerzal, JI Sulkowska
PLoS computational biology 14 (3), e1005970, 2018
172018
Efficient and rapid synthesis of nucleoside diphosphate sugars from nucleoside phosphorimidazolides
P Dabrowski‐Tumanski, J Kowalska, J Jemielity
European Journal of Organic Chemistry 2013 (11), 2147-2154, 2013
142013
GapRepairer: a server to model a structural gap and validate it using topological analysis
AI Jarmolinska, M Kadlof, P Dabrowski-Tumanski, JI Sulkowska
Bioinformatics 34 (19), 3300-3307, 2018
102018
PyLink: a PyMOL plugin to identify links
AM Gierut, P Dabrowski-Tumanski, W Niemyska, KC Millett, JI Sulkowska
Bioinformatics 35 (17), 3166-3168, 2019
82019
-curves in proteins
P Dabrowski-Tumanski, D Goundaroulis, A Stasiak, JI Sulkowska
arXiv preprint arXiv:1908.05919, 2019
52019
Statistical properties of lasso-shape polymers and their implications for complex lasso proteins function
P Dabrowski-Tumanski, B Gren, JI Sulkowska
Polymers 11 (4), 707, 2019
52019
Topoly: Python package to analyze topology of polymers
P Dabrowski-Tumanski, P Rubach, W Niemyska, BA Gren, JI Sulkowska
Briefings in Bioinformatics, 2019
52019
Genus trace reveals the topological complexity and domain structure of biomolecules
S Zając, C Geary, ES Andersen, P Dabrowski-Tumanski, JI Sulkowska, ...
Scientific reports 8 (1), 1-9, 2018
32018
The APS-bracket–A topological tool to classify lasso proteins, RNAs and other tadpole-like structures
P Dabrowski-Tumanski, JI Sulkowska
Reactive and Functional Polymers 132, 19-25, 2018
22018
A topological selection of folding pathways from native states of knotted proteins
A Barbensi, N Yerolemou, O Vipond, BI Mahler, P Dabrowski-Tumanski, ...
arXiv preprint arXiv:2104.10530, 2021
2021
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