Todd DeSantis
Todd DeSantis
Co-founder & Vice President, Informatics, Second Genome, Inc.
Verified email at secondgenome.com - Homepage
TitleCited byYear
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
TZ DeSantis, P Hugenholtz, N Larsen, M Rojas, EL Brodie, K Keller, ...
Appl. Environ. Microbiol. 72 (7), 5069-5072, 2006
68472006
Structure, function and diversity of the healthy human microbiome
C Huttenhower, D Gevers, R Knight, S Abubucker, JH Badger, ...
nature 486 (7402), 207, 2012
47842012
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
D McDonald, MN Price, J Goodrich, EP Nawrocki, TZ DeSantis, A Probst, ...
The ISME journal 6 (3), 610, 2012
26722012
PyNAST: a flexible tool for aligning sequences to a template alignment
JG Caporaso, K Bittinger, FD Bushman, TZ DeSantis, GL Andersen, ...
Bioinformatics 26 (2), 266-267, 2009
26312009
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
BJ Haas, D Gevers, AM Earl, M Feldgarden, DV Ward, G Giannoukos, ...
Genome research 21 (3), 494-504, 2011
18722011
A framework for human microbiome research
BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ...
nature 486 (7402), 215, 2012
12782012
Deciphering the rhizosphere microbiome for disease-suppressive bacteria
R Mendes, M Kruijt, I De Bruijn, E Dekkers, M van der Voort, ...
Science 332 (6033), 1097-1100, 2011
11442011
NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes
TZ DeSantis, P Hugenholtz, K Keller, EL Brodie, N Larsen, YM Piceno, ...
Nucleic acids research 34 (suppl_2), W394-W399, 2006
9922006
Deep-sea oil plume enriches indigenous oil-degrading bacteria
TC Hazen, EA Dubinsky, TZ DeSantis, GL Andersen, YM Piceno, N Singh, ...
Science 330 (6001), 204-208, 2010
9242010
Urban aerosols harbor diverse and dynamic bacterial populations
EL Brodie, TZ DeSantis, JPM Parker, IX Zubietta, YM Piceno, ...
Proceedings of the National Academy of Sciences 104 (1), 299-304, 2007
6372007
High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment
TZ DeSantis, EL Brodie, JP Moberg, IX Zubieta, YM Piceno, GL Andersen
Microbial ecology 53 (3), 371-383, 2007
5132007
Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers
Z Liu, TZ DeSantis, GL Andersen, R Knight
Nucleic acids research 36 (18), e120-e120, 2008
5052008
Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation
EL Brodie, TZ DeSantis, DC Joyner, SM Baek, JT Larsen, GL Andersen, ...
Appl. Environ. Microbiol. 72 (9), 6288-6298, 2006
4932006
Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma
YJ Huang, CE Nelson, EL Brodie, TZ DeSantis, MS Baek, J Liu, T Woyke, ...
Journal of Allergy and Clinical Immunology 127 (2), 372-381. e3, 2011
4792011
Chronic kidney disease alters intestinal microbial flora
ND Vaziri, J Wong, M Pahl, YM Piceno, J Yuan, TZ DeSantis, Z Ni, ...
Kidney international 83 (2), 308-315, 2013
4592013
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
P Yilmaz, R Kottmann, D Field, R Knight, JR Cole, L Amaral-Zettler, ...
Nature biotechnology 29 (5), 415, 2011
3872011
Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys
JJ Werner, O Koren, P Hugenholtz, TZ DeSantis, WA Walters, ...
The ISME journal 6 (1), 94, 2012
3612012
Environmental genomics reveals a single-species ecosystem deep within Earth
D Chivian, EL Brodie, EJ Alm, DE Culley, PS Dehal, TZ DeSantis, ...
Science 322 (5899), 275-278, 2008
3582008
Sequence-specific identification of 18 pathogenic microorganisms using microarray technology
WJ Wilson, CL Strout, TZ DeSantis, JL Stilwell, AV Carrano, GL Andersen
Molecular and cellular probes 16 (2), 119-127, 2002
3562002
High-density microarray of small-subunit ribosomal DNA probes
KH Wilson, WJ Wilson, JL Radosevich, TZ DeSantis, VS Viswanathan, ...
Appl. Environ. Microbiol. 68 (5), 2535-2541, 2002
3422002
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Articles 1–20