Todd DeSantis
Todd DeSantis
Co-founder & Vice President, Informatics, Second Genome, Inc.
Verified email at secondgenome.com - Homepage
Title
Cited by
Cited by
Year
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
TZ DeSantis, P Hugenholtz, N Larsen, M Rojas, EL Brodie, K Keller, ...
Appl. Environ. Microbiol. 72 (7), 5069-5072, 2006
75762006
Structure, function and diversity of the healthy human microbiome
C Huttenhower, D Gevers, R Knight, S Abubucker, JH Badger, ...
nature 486 (7402), 207, 2012
53602012
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
D McDonald, MN Price, J Goodrich, EP Nawrocki, TZ DeSantis, A Probst, ...
The ISME journal 6 (3), 610, 2012
30042012
PyNAST: a flexible tool for aligning sequences to a template alignment
JG Caporaso, K Bittinger, FD Bushman, TZ DeSantis, GL Andersen, ...
Bioinformatics 26 (2), 266-267, 2010
28592010
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
BJ Haas, D Gevers, AM Earl, M Feldgarden, DV Ward, G Giannoukos, ...
Genome research 21 (3), 494-504, 2011
20522011
A framework for human microbiome research
BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ...
nature 486 (7402), 215, 2012
14452012
Deciphering the rhizosphere microbiome for disease-suppressive bacteria
R Mendes, M Kruijt, I De Bruijn, E Dekkers, M van der Voort, ...
Science 332 (6033), 1097-1100, 2011
13002011
NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes
TZ DeSantis, P Hugenholtz, K Keller, EL Brodie, N Larsen, YM Piceno, ...
Nucleic acids research 34 (suppl_2), W394-W399, 2006
10402006
Deep-sea oil plume enriches indigenous oil-degrading bacteria
TC Hazen, EA Dubinsky, TZ DeSantis, GL Andersen, YM Piceno, N Singh, ...
Science 330 (6001), 204-208, 2010
9942010
Urban aerosols harbor diverse and dynamic bacterial populations
EL Brodie, TZ DeSantis, JPM Parker, IX Zubietta, YM Piceno, ...
Proceedings of the National Academy of Sciences 104 (1), 299-304, 2007
6602007
Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers
Z Liu, TZ DeSantis, GL Andersen, R Knight
Nucleic acids research 36 (18), e120-e120, 2008
5322008
Chronic kidney disease alters intestinal microbial flora
ND Vaziri, J Wong, M Pahl, YM Piceno, J Yuan, TZ DeSantis, Z Ni, ...
Kidney international 83 (2), 308-315, 2013
5302013
High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment
TZ DeSantis, EL Brodie, JP Moberg, IX Zubieta, YM Piceno, GL Andersen
Microbial ecology 53 (3), 371-383, 2007
5242007
Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma
YJ Huang, CE Nelson, EL Brodie, TZ DeSantis, MS Baek, J Liu, T Woyke, ...
Journal of Allergy and Clinical Immunology 127 (2), 372-381. e3, 2011
5122011
Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation
EL Brodie, TZ DeSantis, DC Joyner, SM Baek, JT Larsen, GL Andersen, ...
Appl. Environ. Microbiol. 72 (9), 6288-6298, 2006
4992006
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
P Yilmaz, R Kottmann, D Field, R Knight, JR Cole, L Amaral-Zettler, ...
Nature biotechnology 29 (5), 415, 2011
4162011
Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys
JJ Werner, O Koren, P Hugenholtz, TZ DeSantis, WA Walters, ...
The ISME journal 6 (1), 94-103, 2012
4022012
Environmental genomics reveals a single-species ecosystem deep within Earth
D Chivian, EL Brodie, EJ Alm, DE Culley, PS Dehal, TZ DeSantis, ...
Science 322 (5899), 275-278, 2008
3742008
Sequence-specific identification of 18 pathogenic microorganisms using microarray technology
WJ Wilson, CL Strout, TZ DeSantis, JL Stilwell, AV Carrano, GL Andersen
Molecular and cellular probes 16 (2), 119-127, 2002
3582002
High-density microarray of small-subunit ribosomal DNA probes
KH Wilson, WJ Wilson, JL Radosevich, TZ DeSantis, VS Viswanathan, ...
Appl. Environ. Microbiol. 68 (5), 2535-2541, 2002
3452002
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Articles 1–20