| Integrating protein structural dynamics and evolutionary analysis with Bio3D L Skjærven, XQ Yao, G Scarabelli, BJ Grant BMC bioinformatics 15 (1), 399, 2014 | 346 | 2014 |
| CafeMol: a coarse-grained biomolecular simulator for simulating proteins at work H Kenzaki, N Koga, N Hori, R Kanada, W Li, K Okazaki, XQ Yao, ... Journal of Chemical Theory and Computation 7 (6), 1979-1989, 2011 | 213 | 2011 |
| The Bio3D packages for structural bioinformatics BJ Grant, L Skjærven, XQ Yao Protein Science 30 (1), 20-30, 2021 | 199 | 2021 |
| Structural and Molecular Mechanisms of Cytokine-Mediated Endocrine Resistance in Human Breast Cancer Cells JD Stender, JC Nwachukwu, I Kastrati, Y Kim, T Strid, M Yakir, ... Molecular Cell 65 (6), 1122-1135. e5, 2017 | 109 | 2017 |
| Drug export and allosteric coupling in a multidrug transporter revealed by molecular simulations XQ Yao, H Kenzaki, S Murakami, S Takada Nature communications 1, 117, 2010 | 96 | 2010 |
| A dynamic Bayesian network approach to protein secondary structure prediction XQ Yao, H Zhu, ZS She BMC bioinformatics 9 (1), 49, 2008 | 86 | 2008 |
| Dynamic coupling and allosteric networks in the alpha subunit of heterotrimeric G proteins XQ Yao, R Malik, NW Griggs, L Skjærven, JR Traynor, ... Biophysical Journal 110 (3), 427a, 2016 | 79 | 2016 |
| Structures of rhodopsin in complex with G-protein-coupled receptor kinase 1 Q Chen, M Plasencia, Z Li, S Mukherjee, D Patra, CL Chen, T Klose, ... Nature 595 (7868), 600-605, 2021 | 75 | 2021 |
| Drug uptake pathways of multidrug transporter AcrB studied by molecular simulations and site-directed mutagenesis experiments XQ Yao, N Kimura, S Murakami, S Takada Journal of the American Chemical Society 135 (20), 7474-7485, 2013 | 55 | 2013 |
| Online interactive analysis of protein structure ensembles with Bio3D-web L Skjærven, S Jariwala, XQ Yao, BJ Grant Bioinformatics 32 (22), 3510-3512, 2016 | 47 | 2016 |
| Systems structural biology analysis of ligand effects on ERα predicts cellular response to environmental estrogens and anti-hormone therapies JC Nwachukwu, S Srinivasan, NE Bruno, J Nowak, NJ Wright, F Minutolo, ... Cell chemical biology 24 (1), 35-45, 2017 | 43 | 2017 |
| Elucidating Allosteric Communications in Proteins with Difference Contact Network Analysis XQ Yao, M Momin, D Hamelberg Journal of chemical information and modeling 58 (7), 1325-1330, 2018 | 39 | 2018 |
| Rapid Characterization of Allosteric Networks with Ensemble Normal Mode Analysis XQ Yao, L Skjærven, BJ Grant The Journal of Physical Chemistry B 120 (33), 8276-8288, 2016 | 36 | 2016 |
| Mapping the processivity determinants of the kinesin-3 motor domain G Scarabelli, V Soppina, XQ Yao, J Atherton, CA Moores, KJ Verhey, ... Biophysical journal 109 (8), 1537-1540, 2015 | 32 | 2015 |
| Domain-Opening and Dynamic Coupling in the α-Subunit of Heterotrimeric G Proteins XQ Yao, BJ Grant Biophysical journal 105 (2), L08-L10, 2013 | 32 | 2013 |
| Structural Determinants Influencing the Potency and Selectivity of Indazole-Paroxetine Hybrid G Protein–Coupled Receptor Kinase 2 Inhibitors R Bouley, HV Waldschmidt, MC Cato, A Cannavo, J Song, JY Cheung, ... Molecular pharmacology 92 (6), 707-717, 2017 | 25 | 2017 |
| Comparative structural dynamic analysis of GTPases H Li, XQ Yao, BJ Grant PLoS computational biology 14 (11), e1006364, 2018 | 24 | 2018 |
| Navigating the conformational landscape of G protein–coupled receptor kinases during allosteric activation XQ Yao, MC Cato, E Labudde, TS Beyett, JJG Tesmer, BJ Grant Journal of Biological Chemistry 292 (39), 16032-16043, 2017 | 24 | 2017 |
| Detecting Functional Dynamics in Proteins with Comparative Perturbed-Ensembles Analysis XQ Yao, D Hamelberg Accounts of Chemical Research, 2019 | 22 | 2019 |
| Establishing a Framework of Using Residue–Residue Interactions in Protein Difference Network Analysis XQ Yao, M Momin, D Hamelberg J. Chem. Inf. Model. 59 (7), 3222-3228, 2019 | 21 | 2019 |
Barry GrantUniversity of California, San DiegoVerified email at ucsd.edu
