Tomasz Lipniacki
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Single-cell NF-κB dynamics reveal digital activation and analogue information processing
S Tay, JJ Hughey, TK Lee, T Lipniacki, SR Quake, MW Covert
Nature 466 (7303), 267-271, 2010
Mathematical model of NF-κB regulatory module
T Lipniacki, P Paszek, AR Brasier, B Luxon, M Kimmel
Journal of theoretical biology 228 (2), 195-215, 2004
Transcriptional stochasticity in gene expression
T Lipniacki, P Paszek, A Marciniak-Czochra, AR Brasier, M Kimmel
Journal of theoretical biology 238 (2), 348-367, 2006
Stochastic regulation in early immune response
T Lipniacki, P Paszek, AR Brasier, BA Luxon, M Kimmel
Biophysical journal 90 (3), 725-742, 2006
Oscillations and bistability in the stochastic model of p53 regulation
K Puszyński, B Hat, T Lipniacki
Journal of theoretical biology 254 (2), 452-465, 2008
SARS-CoV-2 variant of concern 202012/01 has about twofold replicative advantage and acquires concerning mutations
F Grabowski, G Preibisch, S Giziński, M Kochańczyk, T Lipniacki
Viruses 13 (3), 392, 2021
Stochastic effects and bistability in T cell receptor signaling
T Lipniacki, B Hat, JR Faeder, WS Hlavacek
Journal of theoretical Biology 254 (1), 110-122, 2008
Single TNFα trimers mediating NF-κ B activation: stochastic robustness of NF-κ B signaling
T Lipniacki, K Puszynski, P Paszek, AR Brasier, M Kimmel
BMC bioinformatics 8, 1-20, 2007
The spread of SARS-CoV-2 variant Omicron with a doubling time of 2.0–3.3 days can be explained by immune evasion
F Grabowski, M Kochańczyk, T Lipniacki
Viruses 14 (2), 294, 2022
Cell fate in antiviral response arises in the crosstalk of IRF, NF-κB and JAK/STAT pathways
M Czerkies, Z Korwek, W Prus, M Kochańczyk, J Jaruszewicz-Błońska, ...
Nature communications 9 (1), 493, 2018
Spontaneous NF-κB activation by autocrine TNFα signaling: a computational analysis
J Pękalski, PJ Zuk, M Kochańczyk, M Junkin, R Kellogg, S Tay, T Lipniacki
PloS one 8 (11), e78887, 2013
Digital signaling decouples activation probability and population heterogeneity
RA Kellogg, C Tian, T Lipniacki, SR Quake, S Tay
Elife 4, e08931, 2015
A computational model for early events in B cell antigen receptor signaling: analysis of the roles of Lyn and Fyn
D Barua, WS Hlavacek, T Lipniacki
The Journal of Immunology 189 (2), 646-658, 2012
Asymptotic behavior of distributions of mRNA and protein levels in a model of stochastic gene expression
A Bobrowski, T Lipniacki, K Pichór, R Rudnicki
Journal of mathematical analysis and applications 333 (2), 753-769, 2007
Cascade of vortex loops initiated by a single reconnection of quantum vortices
M Kursa, K Bajer, T Lipniacki
Physical Review B 83 (1), 014515, 2011
Relaxation oscillations and hierarchy of feedbacks in MAPK signaling
M Kochańczyk, P Kocieniewski, E Kozłowska, J Jaruszewicz-Błońska, ...
Scientific reports 7 (1), 38244, 2017
Guidelines for visualizing and annotating rule-based models
LA Chylek, B Hu, ML Blinov, T Emonet, JR Faeder, B Goldstein, ...
Molecular BioSystems 7 (10), 2779-2795, 2011
Dynamics of COVID-19 pandemic at constant and time-dependent contact rates
M Kochańczyk, F Grabowski, T Lipniacki
Mathematical Modelling of Natural Phenomena 15, 28, 2020
Crosstalk between p53 and nuclear factor-κB systems: pro-and anti-apoptotic functions of NF-κB
K Puszynski, R Bertolusso, T Lipniacki
IET systems biology 3 (5), 356-367, 2009
Super-spreading events initiated the exponential growth phase of COVID-19 with ℛ0 higher than initially estimated
M Kochańczyk, F Grabowski, T Lipniacki
Royal Society open science 7 (9), 200786, 2020
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