Yoshiki Vázquez-Baeza
TitleCited byYear
The treatment-naive microbiome in new-onset Crohn’s disease
D Gevers, S Kugathasan, LA Denson, Y Vázquez-Baeza, W Van Treuren, ...
Cell host & microbe 15 (3), 382-392, 2014
14452014
EMPeror: a tool for visualizing high-throughput microbial community data
Y Vázquez-Baeza, M Pirrung, A Gonzalez, R Knight
Gigascience 2 (1), 16, 2013
5172013
Longitudinal analysis of microbial interaction between humans and the indoor environment
S Lax, DP Smith, J Hampton-Marcell, SM Owens, KM Handley, NM Scott, ...
Science 345 (6200), 1048-1052, 2014
4552014
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457, 2017
4292017
Advancing our understanding of the human microbiome using QIIME
JA Navas-Molina, JM Peralta-Sánchez, A González, PJ McMurdie, ...
Methods in enzymology 531, 371-444, 2013
387*2013
Normalization and microbial differential abundance strategies depend upon data characteristics
S Weiss, ZZ Xu, S Peddada, A Amir, K Bittinger, A Gonzalez, C Lozupone, ...
Microbiome 5 (1), 27, 2017
3142017
Meta-analyses of studies of the human microbiota
CA Lozupone, J Stombaugh, A Gonzalez, G Ackermann, D Wendel, ...
Genome research 23 (10), 1704-1714, 2013
2842013
Dynamics of the human gut microbiome in inflammatory bowel disease
J Halfvarson, CJ Brislawn, R Lamendella, Y Vázquez-Baeza, WA Walters, ...
Nature microbiology 2 (5), 17004, 2017
2342017
Temporal variability is a personalized feature of the human microbiome
GE Flores, JG Caporaso, JB Henley, JR Rideout, D Domogala, J Chase, ...
Genome biology 15 (12), 531, 2014
1912014
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
1722018
Dynamic changes in short-and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium difficile infection
A Weingarden, A González, Y Vázquez-Baeza, S Weiss, G Humphry, ...
Microbiome 3 (1), 10, 2015
1592015
American gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
mSystems 3 (3), e00031-18, 2018
752018
Mechanism of neonicotinoid toxicity: impact on oxidative stress and metabolism
X Wang, A Anadón, Q Wu, F Qiao, I Ares, MR Martínez-Larrańaga, Z Yuan, ...
Annual review of Pharmacology and Toxicology 58, 471-507, 2018
64*2018
Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks
Y Vázquez-Baeza, ER Hyde, JS Suchodolski, R Knight
Nature microbiology 1 (12), 16177, 2016
642016
Effects of library size variance, sparsity, and compositionality on the analysis of microbiome data
SJ Weiss, Z Xu, A Amir, S Peddada, K Bittinger, A Gonzalez, C Lozupone, ...
PeerJ PrePrints, 2015
612015
Qiita: rapid, web-enabled microbiome meta-analysis
A Gonzalez, JA Navas-Molina, T Kosciolek, D McDonald, ...
Nature methods 15 (10), 796, 2018
592018
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
562019
Normalization and microbial differential abundance strategies depend upon data characteristics. Microbiome 5: 27
S Weiss, ZZ Xu, S Peddada, A Amir, K Bittinger, A Gonzalez, C Lozupone, ...
552017
Balance trees reveal microbial niche differentiation
JT Morton, J Sanders, RA Quinn, D McDonald, A Gonzalez, ...
MSystems 2 (1), e00162-16, 2017
512017
Tiny microbes, enormous impacts: what matters in gut microbiome studies?
J Debelius, SJ Song, Y Vazquez-Baeza, ZZ Xu, A Gonzalez, R Knight
Genome biology 17 (1), 217, 2016
502016
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Articles 1–20