Austin Swafford
Austin Swafford
Verified email at eng.ucsd.edu - Homepage
Title
Cited by
Cited by
Year
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
2661*2019
Best practices for analysing microbiomes
R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ...
Nature Reviews Microbiology 16 (7), 410-422, 2018
5612018
Thermal ablation of tumor cells with antibody-functionalized single-walled carbon nanotubes
P Chakravarty, R Marches, NS Zimmerman, ADE Swafford, P Bajaj, ...
Proceedings of the National Academy of Sciences 105 (25), 8697-8702, 2008
3872008
American gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), 2018
246*2018
Qiita: rapid, web-enabled microbiome meta-analysis
A Gonzalez, JA Navas-Molina, T Kosciolek, D McDonald, ...
Nature methods 15 (10), 796-798, 2018
1702018
Inhibition of DYRK1A and GSK3B induces human β-cell proliferation
W Shen, B Taylor, Q Jin, V Nguyen-Tran, S Meeusen, YQ Zhang, ...
Nature communications 6 (1), 1-11, 2015
1172015
Microbiome analyses of blood and tissues suggest cancer diagnostic approach
GD Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, S Wandro, ...
Nature 579 (7800), 567-574, 2020
982020
Age-and sex-dependent patterns of gut microbial diversity in human adults
J de la Cuesta-Zuluaga, ST Kelley, Y Chen, JS Escobar, NT Mueller, ...
Msystems 4 (4), 2019
542019
Impacts of the human gut microbiome on therapeutics
Y Vázquez-Baeza, C Callewaert, J Debelius, E Hyde, C Marotz, JT Morton, ...
Annual review of pharmacology and toxicology 58, 253-270, 2018
522018
Mass spectrometry searches using MASST
M Wang, AK Jarmusch, F Vargas, AA Aksenov, JM Gauglitz, K Weldon, ...
Nature biotechnology 38 (1), 23-26, 2020
49*2020
An allele of IKZF1 (Ikaros) conferring susceptibility to childhood acute lymphoblastic leukemia protects against type 1 diabetes
ADE Swafford, JMM Howson, LJ Davison, C Wallace, DJ Smyth, ...
Diabetes 60 (3), 1041-1044, 2011
492011
Differential activation of hepatic invariant NKT cell subsets plays a key role in progression of nonalcoholic steatohepatitis
I Maricic, I Marrero, A Eguchi, R Nakamura, CD Johnson, S Dasgupta, ...
The Journal of Immunology 201 (10), 3017-3035, 2018
252018
Antibodies against insulin measured by electrochemiluminescence predicts insulitis severity and disease onset in non-obese diabetic mice and can distinguish human type 1 …
B Lo, ADE Swafford, KA Shafer-Weaver, LF Jerome, L Rakhlin, ...
Journal of translational medicine 9 (1), 1-16, 2011
212011
High-throughput miniaturized 16S rRNA amplicon library preparation reduces costs while preserving microbiome integrity
JJ Minich, G Humphrey, RAS Benitez, J Sanders, A Swafford, EE Allen, ...
Msystems 3 (6), 2018
19*2018
Challenges in the construction of knowledge bases for human microbiome-disease associations
VD Badal, D Wright, Y Katsis, HC Kim, AD Swafford, R Knight, CN Hsu
Microbiome 7 (1), 1-15, 2019
172019
Detection and correction of artefacts in estimation of rare copy number variants and analysis of rare deletions in type 1 diabetes
NJ Cooper, CJ Shtir, DJ Smyth, H Guo, AD Swafford, M Zanda, ME Hurles, ...
Human molecular genetics 24 (6), 1774-1790, 2015
152015
Human skin, oral, and gut microbiomes predict chronological age
S Huang, N Haiminen, AP Carrieri, R Hu, L Jiang, L Parida, B Russell, ...
Msystems 5 (1), 2020
142020
Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity
C Martino, BP Kellman, DR Sandoval, TM Clausen, CA Marotz, SJ Song, ...
bioRxiv, 2020
122020
Context-aware dimensionality reduction deconvolutes gut microbial community dynamics
C Martino, L Shenhav, CA Marotz, G Armstrong, D McDonald, ...
Nature biotechnology 39 (2), 165-168, 2021
72021
Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment
JJ Minich, F Ali, C Marotz, P Belda-Ferre, L Chiang, JP Shaffer, ...
Microbiome 9 (1), 1-13, 2021
5*2021
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