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Mohammadamin Edrisi
Mohammadamin Edrisi
Ph.D. Student of Computer Science, Rice University
Zweryfikowany adres z rice.edu - Strona główna
Tytuł
Cytowane przez
Cytowane przez
Rok
Current progress and open challenges for applying deep learning across the biosciences
N Sapoval, A Aghazadeh, MG Nute, DA Antunes, A Balaji, R Baraniuk, ...
Nature Communications 13 (1), 1728, 2022
1422022
Methods for copy number aberration detection from single-cell DNA-sequencing data
XF Mallory, M Edrisi, N Navin, L Nakhleh
Genome biology 21, 1-22, 2020
992020
Assessing the performance of methods for copy number aberration detection from single-cell DNA sequencing data
XF Mallory, M Edrisi, N Navin, L Nakhleh
PLoS computational biology 16 (7), e1008012, 2020
342020
A combinatorial approach for single-cell variant detection via phylogenetic inference
M Edrisi, H Zafar, L Nakhleh
bioRxiv, 693960, 2019
132019
Meta-aligner: long-read alignment based on genome statistics
D Nashta-Ali, A Aliyari, A Ahmadian Moghadam, MA Edrisi, SA Motahari, ...
BMC bioinformatics 18, 1-9, 2017
82017
Phylovar: toward scalable phylogeny-aware inference of single-nucleotide variations from single-cell DNA sequencing data
M Edrisi, MV Valecha, SBV Chowdary, S Robledo, HA Ogilvie, D Posada, ...
Bioinformatics 38 (Supplement_1), i195-i202, 2022
62022
19th International Workshop on Algorithms in Bioinformatics (WABI 2019), volume 143 of Leibniz International Proceedings in Informatics (LIPIcs)
M Edrisi, H Zafar, L Nakhleh
Schloss Dagstuhl–Leibniz-Zentrum fuer Informatik, Dagstuhl, Germany 143, 221-22, 2019
52019
NestedBD: Bayesian inference of phylogenetic trees from single-cell DNA copy number profile data under a birth-death model
Y Liu, M Edrisi, HA Ogilvie, L Nakhleh
bioRxiv, 2022.01. 16.476510, 2022
42022
Accurate integration of single-cell DNA and RNA for analyzing intratumor heterogeneity using MaCroDNA
M Edrisi, X Huang, HA Ogilvie, L Nakhleh
Nature communications 14 (1), 8262, 2023
3*2023
MoTERNN: Classifying the Mode of Cancer Evolution Using Recursive Neural Networks
M Edrisi, HA Ogilvie, M Li, L Nakhleh
RECOMB International Workshop on Comparative Genomics, 232-247, 2023
12023
Erratum: Phylovar: toward scalable phylogeny-aware inference of single-nucleotide variations from single-cell DNA sequencing data (Bioinformatics (2022) 38: 1 (i195–i202
M Edrisi, MV Valecha, SBV Chowdary, S Robledo, HA Ogilvie, D Posada, ...
Bioinformatics 39 (5), btad321, 2023
2023
Methods developed during the first National Center for Biotechnology Information Structural Variation Codeathon at Baylor College of Medicine
M Mahmoud, AR Gener, MM Khayat, AC English, A Balaji, A Zhou, ...
F1000Research 9 (1141), 1141, 2020
2020
Simultaneous SNV calling and Phylogenetic Inference For Single-cell Sequencing Data
M Edrisi
Rice University, 2020
2020
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Prace 1–13