| Superantigenic character of an insert unique to SARS-CoV-2 spike supported by skewed TCR repertoire in patients with hyperinflammation MH Cheng, S Zhang, RA Porritt, M Noval Rivas, L Paschold, E Willscher, ... Proceedings of the National Academy of Sciences 117 (41), 25254-25262, 2020 | 306 | 2020 |
| ProDy 2.0: increased scale and scope after 10 years of protein dynamics modelling with Python S Zhang, JM Krieger, Y Zhang, C Kaya, B Kaynak, K Mikulska-Ruminska, ... Bioinformatics 37 (20), 3657-3659, 2021 | 98 | 2021 |
| Intrinsic dynamics is evolutionarily optimized to enable allosteric behavior Y Zhang, P Doruker, B Kaynak, S Zhang, J Krieger, H Li, I Bahar Current Opinion in Structural Biology 62, 14-21, 2020 | 82 | 2020 |
| Structure-encoded global motions and their role in mediating protein-substrate interactions I Bahar, MH Cheng, JY Lee, C Kaya, S Zhang Biophysical journal 109 (6), 1101-1109, 2015 | 62 | 2015 |
| Curcumin modulates cannabinoid receptors in liver fibrosis in vivo and inhibits extracellular matrix expression in hepatic stellate cells by suppressing cannabinoid receptor … Z Zhang, Y Guo, S Zhang, Y Zhang, Y Wang, W Ni, D Kong, W Chen, ... European journal of pharmacology 721 (1-3), 133-140, 2013 | 60 | 2013 |
| An insertion unique to SARS-CoV-2 exhibits superantigenic character strengthened by recent mutations MH Cheng, S Zhang, RA Porritt, M Arditi, I Bahar bioRxiv, 2020 | 56 | 2020 |
| Shared signature dynamics tempered by local fluctuations enables fold adaptability and specificity S Zhang, H Li, JM Krieger, I Bahar Molecular biology and evolution 36 (9), 2053-2068, 2019 | 48 | 2019 |
| Characterization of Differential Dynamics, Specificity, and Allostery of Lipoxygenase Family Members K Mikulska-Ruminska, I Shrivastava, J Krieger, S Zhang, H Li, H Bayır, ... Journal of chemical information and modeling 59 (5), 2496-2508, 2019 | 39 | 2019 |
| WESTPA 2.0: High-performance upgrades for weighted ensemble simulations and analysis of longer-timescale applications JD Russo, S Zhang, JMG Leung, AT Bogetti, JP Thompson, AJ DeGrave, ... Journal of Chemical Theory and Computation 18 (2), 638-649, 2022 | 34 | 2022 |
| HiDeF: identifying persistent structures in multiscale ‘omics data F Zheng, S Zhang, C Churas, D Pratt, I Bahar, T Ideker Genome Biology 22 (1), 1-15, 2021 | 29 | 2021 |
| Chromosomal dynamics predicted by an elastic network model explains genome-wide accessibility and long-range couplings N Sauerwald, S Zhang, C Kingsford, I Bahar Nucleic acids research 45 (7), 3663-3673, 2017 | 27 | 2017 |
| Shared dynamics of LeuT superfamily members and allosteric differentiation by structural irregularities and multimerization L Ponzoni, S Zhang, MH Cheng, I Bahar Philosophical Transactions of the Royal Society B: Biological Sciences 373 …, 2018 | 26 | 2018 |
| Trimerization of dopamine transporter triggered by AIM-100 binding: Molecular mechanism and effect of mutations MH Cheng, L Ponzoni, T Sorkina, JY Lee, S Zhang, A Sorkin, I Bahar Neuropharmacology 161, 107676, 2019 | 14 | 2019 |
| Differences in the intrinsic spatial dynamics of the chromatin contribute to cell differentiation S Zhang, F Chen, I Bahar Nucleic acids research 48 (3), 1131-1145, 2020 | 12 | 2020 |
| Mechanistic Insights into Passive Membrane Permeability of Drug-like Molecules from a Weighted Ensemble of Trajectories S Zhang, JP Thompson, J Xia, AT Bogetti, F York, AG Skillman, LT Chong, ... Journal of chemical information and modeling 62 (8), 1891-1904, 2022 | 11 | 2022 |
| ClustENMD: efficient sampling of biomolecular conformational space at atomic resolution BT Kaynak, S Zhang, I Bahar, P Doruker Bioinformatics 37 (21), 3956–3958, 2021 | 11 | 2021 |
| Normal mode analysis of membrane protein dynamics using the vibrational subsystem analysis Y Zhang, S Zhang, J Xing, I Bahar The Journal of Chemical Physics 154 (19), 2021 | 7 | 2021 |
| An insertion unique to SARS-CoV-2 exhibits superantigenic character strengthened by recent mutations. bioRxiv 2020.05. 21.109272 MH Cheng, S Zhang, RA Porritt, M Arditi, I Baha DOI 10 (2020.05), 21.109272, 2020 | 4 | 2020 |
| A Suite of Tutorials for the WESTPA 2.0 Rare-Events Sampling Software [Article v2. 0] AT Bogetti, JMG Leung, JD Russo, S Zhang, JP Thompson, AS Saglam, ... Living journal of computational molecular science 5 (1), 2023 | 1 | 2023 |
| Elastic network modeling of cellular networks unveils sensor and effector genes that control information flow O Acar, S Zhang, I Bahar, AR Carvunis PLOS Computational Biology 18 (5), e1010181, 2022 | 1 | 2022 |
Ivet BaharDirector, Laufer Center for Physical & Quantitative Biology, Stony Brook UniversityZweryfikowany adres z pitt.edu
