Vriend G

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Chris SanderDana-Farber Cancer Institute, Harvard Medical School, Broad Institute, Memorial Sloan KetteringVerified email at sanderlab.org
Rob HooftProgramme Manager Data Stewardship at DTLVerified email at dtls.nl
Sander NabuursLead Pharma Medicine, OssVerified email at leadpharma.com
Robbie P. JoostenNetherlands Cancer InstituteVerified email at nki.nl
Eddy ArnoldBoard of Governors and Distinguished Professor of Chemistry and Chemical Biology, Rutgers UniversityVerified email at cabm.rutgers.edu
Geerten W. VuisterProfessor of Structural Biology; University of LeicesterVerified email at le.ac.uk
David Lutje HulsikLAVA Therapeutics NVVerified email at lavatherapeutics.com
Jurgen F. DoreleijersAvans University of Applied SciencesVerified email at avans.nl
John E. JohnsonThe Scripps Research InstituteVerified email at scripps.edu
Fabien CampagneSenior Software Engineer for Machine Learning, Xandr, AT&TVerified email at cornell.edu
Jens Erik NielsenVice President, Enzyme Research, Novozymes A/SVerified email at novozymes.com
Wouter G. TouwData Scientist, DSMVerified email at dsm.com
Bert L. de GrootMax Planck Institute for biophysical chemistryVerified email at gwdg.de
Reinhard SchneiderHead of Bioinformatics Core Facility, Luxembourg Centre for Systems Biomedicine (LCSB), UniversityVerified email at uni.lu
Wim VrankenResearch professor, Vrije Universiteit Brussel, BelgiumVerified email at vub.be
Burkhard RostProfessor of Computer Science & Computational Biology & Bioinformatics, TUM, MunichVerified email at tum.de
Randy J ReadProfessor of Protein CrystallographyVerified email at cam.ac.uk
Stephen PettiferReader, School of Computer Science, The University of ManchesterVerified email at manchester.ac.uk
Anastassis PerrakisDivision of Biochemistry, Netherlands Cancer Institute and Oncode Institute, Prof Utrecht UVerified email at nki.nl
Thomas LüttekeLecturer (Akademischer Rat), Justus-Liebig-University GießenVerified email at vetmed.uni-giessen.de

Vriend G

Professor Bioinformatics RadboudUMC Nijmegen

Verified email at radboudumc.nl - Homepage

Protein structure bioinformatics


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WHAT IF: a molecular modeling and drug design program G Vriend Journal of molecular graphics 8 (1), 52-56, 1990	4373	1990
Errors in protein structures RWW Hooft, G Vriend, C Sander, EE Abola Nature 381 (6580), 272-272, 1996	2549	1996
Structure of a human common cold virus and functional relationship to other picornaviruses MG Rossmann, E Arnold, JW Erickson, EA Frankenberger, JP Griffith, ... Nature 317 (6033), 145-153, 1985	1547	1985
Increasing the precision of comparative models with YASARA NOVA—a self‐parameterizing force field E Krieger, G Koraimann, G Vriend Proteins: Structure, Function, and Bioinformatics 47 (3), 393-402, 2002	1476	2002
Improving physical realism, stereochemistry, and side‐chain accuracy in homology modeling: Four approaches that performed well in CASP8 E Krieger, K Joo, J Lee, J Lee, S Raman, J Thompson, M Tyka, D Baker, ... Proteins: Structure, Function, and Bioinformatics 77 (S9), 114-122, 2009	1177	2009
YASARA View—molecular graphics for all devices—from smartphones to workstations E Krieger, G Vriend Bioinformatics 30 (20), 2981-2982, 2014	964	2014
Making optimal use of empirical energy functions: force‐field parameterization in crystal space E Krieger, T Darden, SB Nabuurs, A Finkelstein, G Vriend Proteins: Structure, Function, and Bioinformatics 57 (4), 678-683, 2004	899	2004
Heterozygous germline mutations in the p53 homolog p63 are the cause of EEC syndrome J Celli, P Duijf, BCJ Hamel, M Bamshad, B Kramer, APT Smits, ... Cell 99 (2), 143-153, 1999	815	1999
Human dectin-1 deficiency and mucocutaneous fungal infections B Ferwerda, G Ferwerda, TS Plantinga, JA Willment, AB Van Spriel, ... New England Journal of Medicine 361 (18), 1760-1767, 2009	796	2009
Protein structure analysis of mutations causing inheritable diseases. An e-Science approach with life scientist friendly interfaces H Venselaar, TAH Te Beek, RKP Kuipers, ML Hekkelman, G Vriend BMC bioinformatics 11 (1), 1-10, 2010	765	2010
A series of PDB related databases for everyday needs RP Joosten, TAH Te Beek, E Krieger, ML Hekkelman, RWW Hooft, ... Nucleic acids research 39 (suppl_1), D411-D419, 2010	698	2010
PRODRG, a program for generating molecular topologies and unique molecular descriptors from coordinates of small molecules DMF Van Aalten, R Bywater, JBC Findlay, M Hendlich, RWW Hooft, ... Journal of computer-aided molecular design 10 (3), 255-262, 1996	672	1996
A text-mining analysis of the human phenome MA Van Driel, J Bruggeman, G Vriend, HG Brunner, JAM Leunissen European journal of human genetics 14 (5), 535-542, 2006	660	2006
A series of PDB-related databanks for everyday needs WG Touw, C Baakman, J Black, TAH Te Beek, E Krieger, RP Joosten, ... Nucleic acids research 43 (D1), D364-D368, 2015	654	2015
Mutations in SMAD3 cause a syndromic form of aortic aneurysms and dissections with early-onset osteoarthritis IMBH van de Laar, RA Oldenburg, G Pals, JW Roos-Hesselink, ... Nature genetics 43 (2), 121-126, 2011	633	2011
PredictProtein—an open resource for online prediction of protein structural and functional features G Yachdav, E Kloppmann, L Kajan, M Hecht, T Goldberg, T Hamp, ... Nucleic acids research 42 (W1), W337-W343, 2014	608	2014
Conserved role of a complement-like protein in phagocytosis revealed by dsRNA knockout in cultured cells of the mosquito, Anopheles gambiae EA Levashina, LF Moita, S Blandin, G Vriend, M Lagueux, FC Kafatos Cell 104 (5), 709-718, 2001	590	2001
New ways to boost molecular dynamics simulations E Krieger, G Vriend Journal of computational chemistry 36 (13), 996-1007, 2015	564	2015
The site of attachment in human rhinovirus 14 for antiviral agents that inhibit uncoating TJ Smith, MJ Kremer, M Luo, G Vriend, E Arnold, G Kamer, MG Rossmann, ... Science 233 (4770), 1286-1293, 1986	552	1986
Rational engineering of enzyme stability VGH Eijsink, A Bjørk, S Gåseidnes, R Sirevåg, B Synstad, B van den Burg, ... Journal of biotechnology 113 (1-3), 105-120, 2004	539	2004

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