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Nithin C
Nithin C
Assistant Professor (adiunkt), Biological and Chemical Research Centre, Department of Chemistry
Verified email at chem.uw.edu.pl - Homepage
Title
Cited by
Cited by
Year
Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements
I Manfredonia, C Nithin, A Ponce-Salvatierra, P Ghosh, TK Wirecki, ...
Nucleic Acids Research, gkaa1053, 2020
125*2020
Targeting non-coding RNAs in plants with the CRISPR-Cas technology is a challenge yet worth accepting
J Basak, C Nithin
Frontiers in plant science 6, 1001, 2015
512015
Molecular architecture of protein-RNA recognition sites
A Barik, C Nithin, SP Pilla, RP Bahadur
Journal of Biomolecular Structure and Dynamics, 1-14, 2015
372015
Probing binding hot spots at protein–RNA recognition sites
A Barik, C Nithin, NBR Karampudi, S Mukherjee, RP Bahadur
Nucleic acids research 44 (2), e9-e9, 2016
342016
Bioinformatics tools and benchmarks for computational docking and 3D structure prediction of RNA-protein complexes
C Nithin, P Ghosh, JM Bujnicki
Genes 9 (Computational Analysis of RNA Structure), 432, 2018
322018
A protein–RNA docking benchmark (I): Nonredundant cases
A Barik, C Nithin, P Manasa, RP Bahadur
Proteins: Structure, Function, and Bioinformatics 80 (7), 1866-1871, 2012
322012
QRNAS: software tool for refinement of nucleic acid structures
J Stasiewicz, S Mukherjee, C Nithin, JM Bujnicki
BMC Structural Biology 19 (5), 1-11, 2019
312019
Computational modeling of RNA 3D structure based on experimental data
A Ponce-Salvatierra, Astha, K Merdas, C Nithin, P Ghosh, S Mukherjee, ...
Bioscience Reports, 10.1042/BSR20180430, 2019
282019
Genome-wide identification of miRNAs and lncRNAs in Cajanus cajan
C Nithin, A Thomas, J Basak, RP Bahadur
BMC genomics 18 (1), 1-14, 2017
272017
Computational prediction of miRNAs and their targets in Phaseolus vulgaris using simple sequence repeat signatures
C Nithin, N Patwa, A Thomas, RP Bahadur, J Basak
BMC plant biology 15 (1), 1-16, 2015
262015
A non‐redundant protein–RNA docking benchmark version 2.0
C Nithin, S Mukherjee, RP Bahadur
Proteins: Structure, Function, and Bioinformatics 85 (2), 256–267, 2017
252017
Identification and characterization of differentially expressed Phaseolus vulgaris miRNAs and their targets during mungbean yellow mosaic India virus infection reveals new …
N Patwa, C Nithin, RP Bahadur, J Basak
Genomics 111 (6), 1333-1342, 2018
132018
RNA and DNA G-quadruplexes bind to human Dicer and inhibit its activity
N Koralewska, A Szczepanska, K Ciechanowska, M Wojnicka, ...
Cellular and Molecular Life Sciences 78 (7), 3709-3724, 2021
62021
A structure-based model for the prediction of protein-RNA binding affinity
C Nithin, S Mukherjee, RP Bahadur
RNA, doi:10.1261/rna.071779.119, 2019
62019
Modeling of Three-Dimensional RNA Structures Using SimRNA
TK Wirecki, C Nithin, S Mukherjee, JM Bujnicki, MJ Boniecki
Protein Structure Prediction (Part of the Methods in Molecular Biology book …, 2020
52020
Dissecting water binding sites at protein–protein interfaces: a lesson from the atomic structures in the Protein Data Bank
S Mukherjee, C Nithin, Y Divakaruni, RP Bahadur
Journal of Biomolecular Structure and Dynamics 37 (5), 1204-1219, 2019
52019
Structure prediction of the druggable fragments in SARS-CoV-2 untranslated regions
J Gumna, M Antczak, RW Adamiak, JM Bujnicki, SJ Chen, F Ding, ...
BioRxiv, 2021
22021
Constrained peptides mimic a viral suppressor of RNA silencing
A Kuepper, NM McLoughlin, S Neubacher, A Yeste-Vázquez, ...
Nucleic acids research 49 (22), 12622-12633, 2021
12021
Molecular insights into RNA recognition and gene regulation by the TRIM-NHL protein Mei-P26
A Salerno-Kochan, A Horn, P Ghosh, C Nithin, A Kościelniak, A Meindl, ...
Life science alliance 5 (8), 2022
2022
MAPIYA contact map server for identification and visualization of molecular interactions in proteins and biological complexes
AE Badaczewska-Dawid, C Nithin, K Wroblewski, M Kurcinski, S Kmiecik
Nucleic Acids Research, 2022
2022
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