Yan Wei Lim
Title
Cited by
Cited by
Year
Lytic to temperate switching of viral communities
B Knowles, CB Silveira, BA Bailey, K Barott, VA Cantu, ...
Nature 531 (7595), 466-470, 2016
3102016
Metagenomic analysis of viruses in reclaimed water
K Rosario, C Nilsson, YW Lim, Y Ruan, M Breitbart
Environmental microbiology 11 (11), 2806-2820, 2009
2932009
TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets
R Schmieder, YW Lim, F Rohwer, R Edwards
BMC bioinformatics 11 (1), 1-14, 2010
2162010
Broad surveys of DNA viral diversity obtained through viral metagenomics of mosquitoes
TFF Ng, DL Willner, YW Lim, R Schmieder, B Chau, C Nilsson, S Anthony, ...
PloS one 6 (6), e20579, 2011
2122011
Identification and removal of ribosomal RNA sequences from metatranscriptomes
R Schmieder, YW Lim, R Edwards
Bioinformatics 28 (3), 433-435, 2012
1882012
Spatial distribution of microbial communities in the cystic fibrosis lung
D Willner, MR Haynes, M Furlan, R Schmieder, YW Lim, PB Rainey, ...
The ISME journal 6 (2), 471-474, 2012
1722012
Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors
LW Kelly, GJ Williams, KL Barott, CA Carlson, EA Dinsdale, RA Edwards, ...
Proceedings of the National Academy of Sciences 111 (28), 10227-10232, 2014
1602014
Global microbialization of coral reefs
AF Haas, MFM Fairoz, LW Kelly, CE Nelson, EA Dinsdale, RA Edwards, ...
Nature microbiology 1 (6), 1-7, 2016
1452016
Metagenomics and metatranscriptomics: windows on CF-associated viral and microbial communities
YW Lim, R Schmieder, M Haynes, D Willner, M Furlan, M Youle, K Abbott, ...
Journal of Cystic Fibrosis 12 (2), 154-164, 2013
1452013
Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2, 3-butanedione fermentation
KL Whiteson, S Meinardi, YW Lim, R Schmieder, H Maughan, R Quinn, ...
The ISME journal 8 (6), 1247-1258, 2014
1112014
Clinical insights from metagenomic analysis of sputum samples from patients with cystic fibrosis
YW Lim, JS Evangelista III, R Schmieder, B Bailey, M Haynes, M Furlan, ...
Journal of clinical microbiology 52 (2), 425-437, 2014
1052014
Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung
D Willner, MR Haynes, M Furlan, N Hanson, B Kirby, YW Lim, PB Rainey, ...
American journal of respiratory cell and molecular biology 46 (2), 127-131, 2012
1012012
Biogeochemical forces shape the composition and physiology of polymicrobial communities in the cystic fibrosis lung
RA Quinn, YW Lim, H Maughan, D Conrad, F Rohwer, KL Whiteson
MBio 5 (2), e00956-13, 2014
952014
The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis. Parallels from island biogeography
KL Whiteson, B Bailey, M Bergkessel, D Conrad, L Delhaes, B Felts, ...
American journal of respiratory and critical care medicine 189 (11), 1309-1315, 2014
822014
Microbial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome
RA Quinn, VV Phelan, KL Whiteson, N Garg, BA Bailey, YW Lim, ...
The ISME journal 10 (6), 1483-1498, 2016
742016
Mass spectral similarity for untargeted metabolomics data analysis of complex mixtures
N Garg, CA Kapono, YW Lim, N Koyama, MJA Vermeij, D Conrad, ...
International journal of mass spectrometry 377, 719-727, 2015
702015
Three-dimensional microbiome and metabolome cartography of a diseased human lung
N Garg, M Wang, E Hyde, RR da Silva, AV Melnik, I Protsyuk, ...
Cell host & microbe 22 (5), 705-716. e4, 2017
642017
A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation
RA Quinn, K Whiteson, YW Lim, P Salamon, B Bailey, S Mienardi, ...
The ISME journal 9 (4), 1024-1038, 2015
632015
Identification of a novel human papillomavirus by metagenomic analysis of samples from patients with febrile respiratory illness
JL Mokili, BE Dutilh, YW Lim, BS Schneider, T Taylor, MR Haynes, ...
PloS one 8 (3), e58404, 2013
582013
Species-specific viromes in the ancestral holobiont Hydra
JA Grasis, T Lachnit, F Anton-Erxleben, YW Lim, R Schmieder, S Fraune, ...
PLoS One 9 (10), e109952, 2014
542014
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Articles 1–20