An atlas of human long non-coding RNAs with accurate 5′ ends CC Hon, JA Ramilowski, J Harshbarger, N Bertin, OJL Rackham, J Gough, ... Nature 543 (7644), 199-204, 2017 | 1004 | 2017 |
Gateways to the FANTOM5 promoter level mammalian expression atlas M Lizio, J Harshbarger, H Shimoji, J Severin, T Kasukawa, S Sahin, ... Genome biology 16, 1-14, 2015 | 839 | 2015 |
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells E Arner, CO Daub, K Vitting-Seerup, R Andersson, B Lilje, F Drabløs, ... Science 347 (6225), 1010-1014, 2015 | 598 | 2015 |
An integrated expression atlas of miRNAs and their promoters in human and mouse D De Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Åström, ... Nature biotechnology 35 (9), 872-878, 2017 | 550 | 2017 |
Data integration in the era of omics: current and future challenges D Gomez-Cabrero, I Abugessaisa, D Maier, A Teschendorff, ... BMC systems biology 8, 1-10, 2014 | 472 | 2014 |
FANTOM5 CAGE profiles of human and mouse samples S Noguchi, T Arakawa, S Fukuda, M Furuno, A Hasegawa, F Hori, ... Scientific data 4 (1), 1-10, 2017 | 233 | 2017 |
Update of the FANTOM web resource: expansion to provide additional transcriptome atlases M Lizio, I Abugessaisa, S Noguchi, A Kondo, A Hasegawa, CC Hon, ... Nucleic acids research 47 (D1), D752-D758, 2019 | 201 | 2019 |
Practical Guide to Life Science Databases I Abugessaisa, T Kasukawa | 145 | 2021 |
Functional annotation of human long noncoding RNAs via molecular phenotyping JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ... Genome research 30 (7), 1060-1072, 2020 | 137 | 2020 |
C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution T Kouno, J Moody, ATJ Kwon, Y Shibayama, S Kato, Y Huang, M Böttcher, ... Nature communications 10 (1), 360, 2019 | 115 | 2019 |
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals M Lizio, J Harshbarger, I Abugessaisa, S Noguchi, A Kondo, J Severin, ... Nucleic acids research, gkw995, 2016 | 104 | 2016 |
FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki I Abugessaisa, H Shimoji, S Sahin, A Kondo, J Harshbarger, M Lizio, ... Database 2016, baw105, 2016 | 81 | 2016 |
refTSS: a reference data set for human and mouse transcription start sites I Abugessaisa, S Noguchi, A Hasegawa, A Kondo, H Kawaji, P Carninci, ... Journal of molecular biology 431 (13), 2407-2422, 2019 | 72 | 2019 |
FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs I Abugessaisa, JA Ramilowski, M Lizio, J Severin, A Hasegawa, ... Nucleic acids research 49 (D1), D892-D898, 2021 | 69 | 2021 |
Incidence and risk factors for adalimumab and infliximab anti-drug antibodies in rheumatoid arthritis: a European retrospective multicohort analysis J Quistrebert, S Hässler, D Bachelet, C Mbogning, A Musters, PP Tak, ... Seminars in Arthritis and Rheumatism 48 (6), 967-975, 2019 | 64 | 2019 |
FANTOM5 CAGE profiles of human and mouse reprocessed for GRCh38 and GRCm38 genome assemblies I Abugessaisa, S Noguchi, A Hasegawa, J Harshbarger, A Kondo, M Lizio, ... Scientific Data 4 (1), 1-10, 2017 | 64 | 2017 |
SCPortalen: human and mouse single-cell centric database I Abugessaisa, S Noguchi, M Böttcher, A Hasegawa, T Kouno, S Kato, ... Nucleic acids research 46 (D1), D781-D787, 2018 | 52 | 2018 |
Comparative transcriptomics of primary cells in vertebrates T Alam, S Agrawal, J Severin, RS Young, R Andersson, E Arner, ... Genome research 30 (7), 951-961, 2020 | 39 | 2020 |
A robust machine learning framework to identify signatures for frailty: a nested case-control study in four aging European cohorts D Gomez-Cabrero, S Walter, I Abugessaisa, R Miñambres-Herraiz, ... Geroscience 43 (3), 1317-1329, 2021 | 37 | 2021 |
Systems Medicine: from molecular features and models to the clinic in COPD D Gomez-Cabrero, J Menche, I Cano, I Abugessaisa, ... Journal of Translational Medicine 12, 1-11, 2014 | 35 | 2014 |