Charles Girardot, PhD
Charles Girardot, PhD
Verified email at embl.de
Title
Cited by
Cited by
Year
Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development
S Bonn, RP Zinzen, C Girardot, EH Gustafson, A Perez-Gonzalez, ...
Nature genetics 44 (2), 148-156, 2012
4632012
Combinatorial binding predicts spatio-temporal cis-regulatory activity
RP Zinzen, C Girardot, J Gagneur, M Braun, EEM Furlong
Nature 462 (7269), 65-70, 2009
3982009
A core transcriptional network for early mesoderm development in Drosophila melanogaster
T Sandmann, C Girardot, M Brehme, W Tongprasit, V Stolc, EEM Furlong
Genes & development 21 (4), 436-449, 2007
3222007
A transcription factor collective defines cardiac cell fate and reflects lineage history
G Junion, M Spivakov, C Girardot, M Braun, EH Gustafson, E Birney, ...
Cell 148 (3), 473-486, 2012
2362012
Dynamic regulation by polycomb group protein complexes controls pattern formation and the cell cycle in Drosophila
K Oktaba, L Gutiérrez, J Gagneur, C Girardot, AK Sengupta, EEM Furlong, ...
Developmental cell 15 (6), 877-889, 2008
2092008
Model-based method for transcription factor target identification with limited data
A Honkela, C Girardot, EH Gustafson, YH Liu, EEM Furlong, ...
Proceedings of the National Academy of Sciences 107 (17), 7793-7798, 2010
1152010
Analysis of variation at transcription factor binding sites in Drosophila and humans
M Spivakov, J Akhtar, P Kheradpour, K Beal, C Girardot, G Koscielny, ...
Genome biology 13 (9), 1-15, 2012
1002012
Elucidation of an archaeal replication protein network to generate enhanced PCR enzymes
M Motz, I Kober, C Girardot, E Loeser, U Bauer, M Albers, G Moeckel, ...
Journal of Biological Chemistry 277 (18), 16179-16188, 2002
772002
A conserved role for Snail as a potentiator of active transcription
M Rembold, L Ciglar, JO Yáñez-Cuna, RP Zinzen, C Girardot, A Jain, ...
Genes & development 28 (2), 167-181, 2014
722014
Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers
C Girardot, J Scholtalbers, S Sauer, SY Su, EEM Furlong
BMC bioinformatics 17 (1), 1-6, 2016
622016
Expanding the circuitry of pluripotency by selective isolation of chromatin-associated proteins
MR Rafiee, C Girardot, G Sigismondo, J Krijgsveld
Molecular cell 64 (3), 624-635, 2016
592016
Dual functionality of cis-regulatory elements as developmental enhancers and Polycomb response elements
J Erceg, T Pakozdi, R Marco-Ferreres, Y Ghavi-Helm, C Girardot, ...
Genes & development 31 (6), 590-602, 2017
512017
Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer's activity
J Erceg, TE Saunders, C Girardot, DP Devos, L Hufnagel, EEM Furlong
PLoS Genet 10 (1), e1004060, 2014
472014
4D Xpress : a database for cross-species expression pattern comparisons
Y Haudry, H Berube, I Letunic, PD Weeber, J Gagneur, C Girardot, ...
Nucleic acids research 36 (suppl_1), D847-D853, 2007
392007
Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activity
P Khoueiry, C Girardot, L Ciglar, PC Peng, EH Gustafson, S Sinha, ...
Elife 6, e28440, 2017
322017
Haploinsufficiency of the intellectual disability gene SETD5 disturbs developmental gene expression and cognition
E Deliu, N Arecco, J Morandell, CP Dotter, X Contreras, C Girardot, ...
Nature neuroscience 21 (12), 1717-1727, 2018
242018
Opbp is a new architectural/insulator protein required for ribosomal gene expression
N Zolotarev, O Maksimenko, O Kyrchanova, E Sokolinskaya, I Osadchiy, ...
Nucleic acids research 45 (21), 12285-12300, 2017
222017
Coordinated repression and activation of two transcriptional programs stabilizes cell fate during myogenesis
L Ciglar, C Girardot, B Wilczyński, M Braun, EEM Furlong
Development 141 (13), 2633-2643, 2014
202014
Qualitative dynamical modelling can formally explain mesoderm specification and predict novel developmental phenotypes
A Mbodj, EH Gustafson, L Ciglar, G Junion, A Gonzalez, C Girardot, ...
PLoS computational biology 12 (9), e1005073, 2016
92016
Lineage-resolved enhancer and promoter usage during a time course of embryogenesis
JP Reddington, DA Garfield, OM Sigalova, AK Calviello, ...
Developmental Cell 55 (5), 648-664. e9, 2020
62020
The system can't perform the operation now. Try again later.
Articles 1–20