| Community-led, integrated, reproducible multi-omics with anvi’o AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ... Nature microbiology 6 (1), 3-6, 2021 | 436 | 2021 |
| Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations ML Bendall, SLR Stevens, LK Chan, S Malfatti, P Schwientek, J Tremblay, ... The ISME journal 10 (7), 1589-1601, 2016 | 233 | 2016 |
| FAIR principles for research software (FAIR4RS principles) NPC Hong, DS Katz, M Barker, AL Lamprecht, C Martinez, ... | 97* | 2022 |
| Ecophysiology of freshwater Verrucomicrobia inferred from metagenome-assembled genomes S He, SLR Stevens, LK Chan, S Bertilsson, T Glavina del Rio, SG Tringe, ... Msphere 2 (5), 10.1128/msphere. 00277-17, 2017 | 78 | 2017 |
| Community-led, integrated, reproducible multi-omics with anvi’o. Nat Microbiol 6: 3–6 AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ... | 73 | 2021 |
| Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations SL Garcia, SLR Stevens, B Crary, M Martinez-Garcia, R Stepanauskas, ... The ISME journal 12 (3), 742-755, 2018 | 67 | 2018 |
| Freshwater carbon and nutrient cycles revealed through reconstructed population genomes AM Linz, S He, SLR Stevens, K Anantharaman, RR Rohwer, ... PeerJ 6, e6075, 2018 | 63 | 2018 |
| Expanded phylogenetic diversity and metabolic flexibility of mercury-methylating microorganisms EA McDaniel, BD Peterson, SLR Stevens, PQ Tran, K Anantharaman, ... Msystems 5 (4), 10.1128/msystems. 00299-20, 2020 | 57 | 2020 |
| Building a local community of practice in scientific programming for life scientists SLR Stevens, M Kuzak, C Martinez, A Moser, P Bleeker, M Galland PLoS biology 16 (11), e2005561, 2018 | 27 | 2018 |
| Ecophysiology of freshwater S He, SLR Stevens, LK Chan, S Bertilsson, T Glavina del Rio, SG Tringe, ... Verrucomicrobia inferred from metagenome-assembled genomes. mSphere 2, 2017 | 14 | 2017 |
| Ecophysiology of freshwater Verrucomicrobia inferred from metagenome-assembled genomes. mSphere 2: e00277-17 S He, SLR Stevens, LK Chan, S Bertilsson, T Glavina del Rio, SG Tringe, ... | 13 | 2017 |
| Ecophysiology of freshwater verrucomicrobia inferred from metagenome-assembled genomes. mSphere 2 S He, SLR Stevens, LK Chan, S Bertilsson, T Glavina del Rio, SG Tringe, ... | 12 | 2017 |
| Expanded phylogenetic diversity and metabolic flexibility of microbial mercury methylation EA McDaniel, B Peterson, SLR Stevens, PQ Tran, K Anantharaman, ... BioRxiv, 2020.01. 16.909358, 2020 | 8 | 2020 |
| Diversity, distribution, and expression of opsin genes in freshwater lakes S He, AM Linz, SLR Stevens, PQ Tran, F Moya‐Flores, BO Oyserman, ... Molecular Ecology, 2023 | 1 | 2023 |
| Genomics as a Lens Into the Population Structure and Evolutionary Dynamics of Freshwater Microbes S Stevens University of Wisconsin--Madison, 2019 | | 2019 |
| Connections between freshwater carbon and nutrient cycles revealed through reconstructed population genomes AM Linz, S He, SLR Stevens, K Anantharaman, RR Rohwer, ... bioRxiv, 365627, 2018 | | 2018 |
| Ecophysiology of freshwater Verrucomicrobia inferred from genomes recovered through time-series metagenomics S He, SLR Stevens, LK Chan, S Bertilsson, TG del Rio, SG Tringe, ... bioRxiv, 150078, 2017 | | 2017 |
| Contrasting patterns of genome-level diversity across distinct co-occurring bacterial S Garcia, S Stevens, B Crary | | 2016 |
| Genome-wide selective sweeps in natural bacterial populations revealed by time-series metagenomics LK Chan, ML Bendall, S Malfatti, P Schwientek, J Tremblay, W Schackwitz, ... | | 2014 |
| Population Dynamics of Sequence-Discrete Bacterial Populations Inferred Using Metagenomes S Stevens, M Bendall, D Kang, J Froula, LK Chan, S Tringe, R Malmstrom, ... | | 2014 |
