Alexey Melnik
Alexey Melnik
Verified email at ucsd.edu
Title
Cited by
Cited by
Year
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
23112019
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
M Wang, JJ Carver, VV Phelan, LM Sanchez, N Garg, Y Peng, ...
Nature biotechnology 34 (8), 828-837, 2016
13102016
Best practices for analysing microbiomes
R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ...
Nature Reviews Microbiology 16 (7), 410-422, 2018
5812018
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
5622018
Minimum information about a biosynthetic gene cluster
MH Medema, R Kottmann, P Yilmaz, M Cummings, JB Biggins, K Blin, ...
Nature chemical biology 11 (9), 625-631, 2015
5102015
Antimicrobials from human skin commensal bacteria protect against Staphylococcus aureus and are deficient in atopic dermatitis
T Nakatsuji, TH Chen, S Narala, KA Chun, AM Two, T Yun, F Shafiq, ...
Science translational medicine 9 (378), 2017
4722017
American gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), 2018
2492018
SIRIUS 4: a rapid tool for turning tandem mass spectra into metabolite structure information
K Dührkop, M Fleischauer, M Ludwig, AA Aksenov, AV Melnik, M Meusel, ...
Nature methods 16 (4), 299-302, 2019
1952019
Indexing the Pseudomonas specialized metabolome enabled the discovery of poaeamide B and the bananamides
DD Nguyen, AV Melnik, N Koyama, X Lu, M Schorn, J Fang, K Aguinaldo, ...
Nature microbiology 2 (1), 1-10, 2016
882016
Prioritizing Natural Product Diversity in a Collection of 146 Bacterial Strains Based on Growth and Extraction Protocols
PCDBSM Max Crüsemann, Ellis C. O’Neill, Charles B. Larson, Alexey V. Melnik ...
Journal of Natural Product, 1021, 2016
78*2016
Pep2Path: automated mass spectrometry-guided genome mining of peptidic natural products
MH Medema, Y Paalvast, DD Nguyen, A Melnik, PC Dorrestein, E Takano, ...
PLoS Comput Biol 10 (9), e1003822, 2014
772014
Global chemical effects of the microbiome include new bile-acid conjugations
RA Quinn, AV Melnik, A Vrbanac, T Fu, KA Patras, MP Christy, Z Bodai, ...
Nature 579 (7797), 123-129, 2020
652020
Three-dimensional microbiome and metabolome cartography of a diseased human lung
N Garg, M Wang, E Hyde, RR da Silva, AV Melnik, I Protsyuk, ...
Cell host & microbe 22 (5), 705-716. e4, 2017
622017
3D molecular cartography using LC–MS facilitated by Optimus and'ili software
I Protsyuk, AV Melnik, LF Nothias, L Rappez, P Phapale, AA Aksenov, ...
Nature protocols 13 (1), 134, 2018
522018
Coupling targeted and untargeted mass spectrometry for metabolome-microbiome-wide association studies of human fecal samples
AV Melnik, RR da Silva, ER Hyde, AA Aksenov, F Vargas, A Bouslimani, ...
Analytical chemistry 89 (14), 7549-7559, 2017
472017
Natural products as mediators of disease
N Garg, T Luzzatto-Knaan, AV Melnik, AM Caraballo-Rodríguez, ...
Natural product reports 34 (2), 194-219, 2017
462017
Mass spectrometry searches using MASST
M Wang, AK Jarmusch, F Vargas, AA Aksenov, JM Gauglitz, K Weldon, ...
Nature biotechnology 38 (1), 23-26, 2020
432020
Lifestyle chemistries from phones for individual profiling
A Bouslimani, AV Melnik, Z Xu, A Amir, RR da Silva, M Wang, N Bandeira, ...
Proceedings of the National Academy of Sciences 113 (48), E7645-E7654, 2016
422016
The impact of skin care products on skin chemistry and microbiome dynamics
A Bouslimani, R da Silva, T Kosciolek, S Janssen, C Callewaert, A Amir, ...
BMC biology 17 (1), 1-20, 2019
412019
Mass spectrometry tools and workflows for revealing microbial chemistry
T Luzzatto-Knaan, AV Melnik, PC Dorrestein
Analyst 140 (15), 4949-4966, 2015
392015
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Articles 1–20