Alexey Melnik
Alexey Melnik
Verified email at ucsd.edu
Title
Cited by
Cited by
Year
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
31542019
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
M Wang, JJ Carver, VV Phelan, LM Sanchez, N Garg, Y Peng, ...
Nature biotechnology 34 (8), 828-837, 2016
15112016
Best practices for analysing microbiomes
R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ...
Nature Reviews Microbiology 16 (7), 410-422, 2018
6832018
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
6072018
Minimum information about a biosynthetic gene cluster
MH Medema, R Kottmann, P Yilmaz, M Cummings, JB Biggins, K Blin, ...
Nature chemical biology 11 (9), 625-631, 2015
5572015
Antimicrobials from human skin commensal bacteria protect against Staphylococcus aureus and are deficient in atopic dermatitis
T Nakatsuji, TH Chen, S Narala, KA Chun, AM Two, T Yun, F Shafiq, ...
Science translational medicine 9 (378), 2017
5332017
American Gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), e00031-18, 2018
2812018
SIRIUS 4: a rapid tool for turning tandem mass spectra into metabolite structure information
K Dührkop, M Fleischauer, M Ludwig, AA Aksenov, AV Melnik, M Meusel, ...
Nature methods 16 (4), 299-302, 2019
2472019
Indexing the Pseudomonas specialized metabolome enabled the discovery of poaeamide B and the bananamides
DD Nguyen, AV Melnik, N Koyama, X Lu, M Schorn, J Fang, K Aguinaldo, ...
Nature microbiology 2 (1), 1-10, 2016
1012016
Global chemical effects of the microbiome include new bile-acid conjugations
RA Quinn, AV Melnik, A Vrbanac, T Fu, KA Patras, MP Christy, Z Bodai, ...
Nature 579 (7797), 123-129, 2020
882020
Prioritizing Natural Product Diversity in a Collection of 146 Bacterial Strains Based on Growth and Extraction Protocols
PCDBSM Max Crüsemann, Ellis C. O’Neill, Charles B. Larson, Alexey V. Melnik ...
Journal of Natural Product, 1021, 2016
86*2016
Pep2Path: automated mass spectrometry-guided genome mining of peptidic natural products
MH Medema, Y Paalvast, DD Nguyen, A Melnik, PC Dorrestein, E Takano, ...
PLoS computational biology 10 (9), e1003822, 2014
842014
Three-dimensional microbiome and metabolome cartography of a diseased human lung
N Garg, M Wang, E Hyde, RR da Silva, AV Melnik, I Protsyuk, ...
Cell host & microbe 22 (5), 705-716. e4, 2017
642017
Mass spectrometry searches using MASST
M Wang, AK Jarmusch, F Vargas, AA Aksenov, JM Gauglitz, K Weldon, ...
Nature biotechnology 38 (1), 23-26, 2020
562020
3D molecular cartography using LC–MS facilitated by Optimus and'ili software
I Protsyuk, AV Melnik, LF Nothias, L Rappez, P Phapale, AA Aksenov, ...
Nature protocols 13 (1), 134-154, 2018
542018
The impact of skin care products on skin chemistry and microbiome dynamics
A Bouslimani, R da Silva, T Kosciolek, S Janssen, C Callewaert, A Amir, ...
BMC biology 17 (1), 1-20, 2019
522019
Natural products as mediators of disease
N Garg, T Luzzatto-Knaan, AV Melnik, AM Caraballo-Rodríguez, ...
Natural product reports 34 (2), 194-219, 2017
522017
Intermittent hypoxia and hypercapnia, a hallmark of obstructive sleep apnea, alters the gut microbiome and metabolome
A Tripathi, AV Melnik, J Xue, O Poulsen, MJ Meehan, G Humphrey, ...
Msystems 3 (3), e00020-18, 2018
502018
QIIME 2: reproducible, interactive, scalable, and extensible microbiome data science
E Boylen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints 6, e27295v2, 2018
502018
Coupling targeted and untargeted mass spectrometry for metabolome-microbiome-wide association studies of human fecal samples
AV Melnik, RR da Silva, ER Hyde, AA Aksenov, F Vargas, A Bouslimani, ...
Analytical chemistry 89 (14), 7549-7559, 2017
492017
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Articles 1–20