Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains SV Ulianov, EE Khrameeva, AA Gavrilov, IM Flyamer, P Kos, ... Genome research 26 (1), 70-84, 2016 | 373 | 2016 |
Chromosome conformation capture (from 3C to 5C) and its ChIP-based modification A Gavrilov, E Eivazova, I Pirozhkova, M Lipinski, S Razin, Y Vassetzky Chromatin Immunoprecipitation Assays: Methods and Protocols, 171-188, 2009 | 105 | 2009 |
Disclosure of a structural milieu for the proximity ligation reveals the elusive nature of an active chromatin hub AA Gavrilov, ES Gushchanskaya, O Strelkova, O Zhironkina, II Kireev, ... Nucleic acids research, 2013 | 102 | 2013 |
Nuclear lamina integrity is required for proper spatial organization of chromatin in Drosophila SV Ulianov, SA Doronin, EE Khrameeva, PI Kos, AV Luzhin, SS Starikov, ... Nature communications 10 (1), 1176, 2019 | 101 | 2019 |
Transcription factories in the context of the nuclear and genome organization SV Razin, AA Gavrilov, A Pichugin, M Lipinski, OV Iarovaia, YS Vassetzky Nucleic acids research 39 (21), 9085-9092, 2011 | 80 | 2011 |
Chromatin without the 30-nm fiber: Constrained disorder instead of hierarchical folding SV Razin, AA Gavrilov epigenetics 9 (5), 653-657, 2014 | 79 | 2014 |
In vivo formaldehyde cross-linking: it is time for black box analysis A Gavrilov, SV Razin, G Cavalli Briefings in functional genomics 14 (2), 163-165, 2015 | 77 | 2015 |
Suppression of liquid–liquid phase separation by 1, 6-hexanediol partially compromises the 3D genome organization in living cells SV Ulianov, AK Velichko, MD Magnitov, AV Luzhin, AK Golov, ... Nucleic acids research 49 (18), 10524-10541, 2021 | 75 | 2021 |
Spatial configuration of the chicken α-globin gene domain: immature and active chromatin hubs AA Gavrilov, SV Razin Nucleic acids research 36 (14), 4629-4640, 2008 | 66 | 2008 |
Communication of genome regulatory elements in a folded chromosome SV Razin, AA Gavrilov, ES Ioudinkova, OV Iarovaia FEBS letters 587 (13), 1840-1847, 2013 | 65 | 2013 |
Identification of c-Myb Target Genes in K562 Cells Reveals a Role for c-Myb as a Master Regulator PI Lorenzo, EM Brendeford, S Gilfillan, AA Gavrilov, M Leedsak, SV Razin, ... Genes & Cancer 2 (8), 805-817, 2011 | 52 | 2011 |
Order and stochasticity in the folding of individual Drosophila genomes SV Ulianov, VV Zakharova, AA Galitsyna, PI Kos, KE Polovnikov, ... Nature communications 12 (1), 41, 2021 | 51 | 2021 |
Nuclear compartments, genome folding, and enhancer-promoter communication SV Ulianov, AA Gavrilov, SV Razin International review of cell and molecular biology 315, 183-244, 2015 | 51 | 2015 |
A CTCF-dependent silencer located in the differentially methylated area may regulate expression of a housekeeping gene overlapping a tissue-specific gene domain D Klochkov, H Rincón-Arano, ES Ioudinkova, V Valadez-Graham, ... Molecular and cellular biology 26 (5), 1589-1597, 2006 | 50 | 2006 |
CRISPR/Cas9-generated mouse model of Duchenne muscular dystrophy recapitulating a newly identified large 430 kb deletion in the human DMD gene TV Egorova, ED Zotova, DA Reshetov, AV Polikarpova, SG Vassilieva, ... Disease models & mechanisms 12 (4), dmm037655, 2019 | 42 | 2019 |
The role of liquid–liquid phase separation in the compartmentalization of cell nucleus and spatial genome organization SV Razin, AA Gavrilov Biochemistry (Moscow) 85, 643-650, 2020 | 41 | 2020 |
Studying RNA–DNA interactome by Red-C identifies noncoding RNAs associated with various chromatin types and reveals transcription dynamics AA Gavrilov, AA Zharikova, AA Galitsyna, AV Luzhin, NM Rubanova, ... Nucleic acids research 48 (12), 6699-6714, 2020 | 36 | 2020 |
Actual Ligation Frequencies in the Chromosome Conformation Capture Procedure AA Gavrilov, AK Golov, SV Razin PloS one 8 (3), e60403, 2013 | 31 | 2013 |
Chromatin Immunoprecipitation Assays A Gavrilov, E Eivazova Methods in Molecular Biology 567 (1), 171-188, 2009 | 31* | 2009 |
Quantitative analysis of genomic element interactions by molecular colony technique AA Gavrilov, HV Chetverina, ES Chermnykh, SV Razin, AB Chetverin Nucleic acids research 42 (5), e36-e36, 2014 | 30 | 2014 |