John Sidney
John Sidney
La Jolla Institute for Allergy
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The relationship between class I binding affinity and immunogenicity of potential cytotoxic T cell epitopes.
A Sette, A Vitiello, B Reherman, P Fowler, R Nayersina, WM Kast, ...
Journal of immunology (Baltimore, Md.: 1950) 153 (12), 5586-5592, 1994
Selective and cross-reactive SARS-CoV-2 T cell epitopes in unexposed humans
J Mateus, A Grifoni, A Tarke, J Sidney, SI Ramirez, JM Dan, ZC Burger, ...
Science 370 (6512), 89-94, 2020
A sequence homology and bioinformatic approach can predict candidate targets for immune responses to SARS-CoV-2
A Grifoni, J Sidney, Y Zhang, RH Scheuermann, B Peters, A Sette
Cell host & microbe 27 (4), 671-680. e2, 2020
Prominent role of secondary anchor residues in peptide binding to HLA-A2. 1 molecules
J Ruppert, J Sidney, E Celis, RT Kubo, HM Grey, A Sette
Cell 74 (5), 929-937, 1993
A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach
P Wang, J Sidney, C Dow, B Mothé, A Sette, B Peters
PLoS computational biology 4 (4), e1000048, 2008
Several common HLA-DR types share largely overlapping peptide binding repertoires
S Southwood, J Sidney, A Kondo, MF del Guercio, E Appella, S Hoffman, ...
The Journal of Immunology 160 (7), 3363-3373, 1998
NetMHCpan, a method for MHC class I binding prediction beyond humans
I Hoof, B Peters, J Sidney, LE Pedersen, A Sette, O Lund, S Buus, ...
Immunogenetics 61, 1-13, 2009
Nine major HLA class I supertypes account for the vast preponderance of HLA-A and-B polymorphism
A Sette, J Sidney
Immunogenetics 50 (3-4), 201-212, 1999
HLA class I supertypes: a revised and updated classification
J Sidney, B Peters, N Frahm, C Brander, A Sette
BMC immunology 9 (1), 1-15, 2008
Peptide binding predictions for HLA DR, DP and DQ molecules
P Wang, J Sidney, Y Kim, A Sette, O Lund, M Nielsen, B Peters
BMC bioinformatics 11, 1-12, 2010
The cytotoxic T lymphocyte response to multiple hepatitis B virus polymerase epitopes during and after acute viral hepatitis.
B Rehermann, P Fowler, J Sidney, J Person, A Redeker, M Brown, ...
The Journal of experimental medicine 181 (3), 1047-1058, 1995
Development of high potency universal DR-restricted helper epitopes by modification of high affinity DR-blocking peptides
J Alexander, J Sidney, S Southwood, J Ruppert, C Oseroff, A Maewal, ...
Immunity 1 (9), 751-761, 1994
T cells from patients with Parkinson’s disease recognize α-synuclein peptides
D Sulzer, RN Alcalay, F Garretti, L Cote, E Kanter, J Agin-Liebes, C Liong, ...
Nature 546 (7660), 656-661, 2017
Predicting population coverage of T-cell epitope-based diagnostics and vaccines
HH Bui, J Sidney, K Dinh, S Southwood, MJ Newman, A Sette
BMC bioinformatics 7 (1), 1-5, 2006
A consensus epitope prediction approach identifies the breadth of murine TCD8+-cell responses to vaccinia virus
M Moutaftsi, B Peters, V Pasquetto, DC Tscharke, J Sidney, HH Bui, ...
Nature biotechnology 24 (7), 817-819, 2006
Comprehensive analysis of dengue virus-specific responses supports an HLA-linked protective role for CD8+ T cells
D Weiskopf, MA Angelo, EL de Azeredo, J Sidney, JA Greenbaum, ...
Proceedings of the National Academy of Sciences 110 (22), E2046-E2053, 2013
Mass spectrometry profiling of HLA-associated peptidomes in mono-allelic cells enables more accurate epitope prediction
JG Abelin, DB Keskin, S Sarkizova, CR Hartigan, W Zhang, J Sidney, ...
Immunity 46 (2), 315-326, 2017
The outcome of hepatitis C virus infection is predicted by escape mutations in epitopes targeted by cytotoxic T lymphocytes
AL Erickson, Y Kimura, S Igarashi, J Eichelberger, M Houghton, J Sidney, ...
Immunity 15 (6), 883-895, 2001
Virus-specific cytotoxic T-lymphocyte responses select for amino-acid variation in simian immunodeficiency virus Env and Nef
DT Evans, DH O'Connor, P Jing, JL Dzuris, J Sidney, J da Silva, TM Allen, ...
Nature medicine 5 (11), 1270-1276, 1999
The immune epitope database and analysis resource: from vision to blueprint
B Peters, J Sidney, P Bourne, HH Bui, S Buus, G Doh, W Fleri, ...
PLoS biology 3 (3), e91, 2005
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