| Genomic and proteomic characterization of “Candidatus Nitrosopelagicus brevis”: An ammonia-oxidizing archaeon from the open ocean AE Santoro, CL Dupont, RA Richter, MT Craig, P Carini, MR McIlvin, ... Proceedings of the National Academy of Sciences, 2015 | 272 | 2015 |
| Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum JS McLean, MJ Lombardo, JH Badger, A Edlund, M Novotny, ... Proceedings of the National Academy of Sciences 110 (26), E2390-E2399, 2013 | 194 | 2013 |
| Precision-guided antimicrobial peptide as a targeted modulator of human microbial ecology L Guo, JS McLean, Y Yang, R Eckert, CW Kaplan, P Kyme, O Sheikh, ... Proceedings of the National Academy of Sciences, 2015 | 175 | 2015 |
| An in vitrobiofilm model system maintaining a highly reproducible species and metabolic diversity approaching that of the human oral microbiome A Edlund, Y Yang, AP Hall, L Guo, R Lux, X He, KE Nelson, KH Nealson, ... Microbiome 1, 1-17, 2013 | 136 | 2013 |
| Meta-omics uncover temporal regulation of pathways across oral microbiome genera during in vitro sugar metabolism A Edlund, Y Yang, S Yooseph, AP Hall, DD Nguyen, PC Dorrestein, ... ISME J, 2015 | 82 | 2015 |
| A garter snake transcriptome: pyrosequencing, de novo assembly, and sex-specific differences TS Schwartz, H Tae, Y Yang, K Mockaitis, JL Van Hemert, SR Proulx, ... BMC genomics 11, 1-17, 2010 | 78 | 2010 |
| Gene discovery in the horned beetle Onthophagus taurus JH Choi, T Kijimoto, E Snell-Rood, H Tae, Y Yang, AP Moczek, J Andrews BMC genomics 11, 1-19, 2010 | 55 | 2010 |
| Uncovering complex microbiome activities via metatranscriptomics during 24 hours of oral biofilm assembly and maturation A Edlund, Y Yang, S Yooseph, X He, W Shi, JS McLean Microbiome 6, 1-22, 2018 | 44 | 2018 |
| BioVLAB-MMIA: a cloud environment for microRNA and mRNA integrated analysis (MMIA) on Amazon EC2 H Lee, Y Yang, H Chae, S Nam, D Choi, P Tangchaisin, C Herath, ... IEEE transactions on nanobioscience 11 (3), 266-272, 2012 | 37 | 2012 |
| Biovlab-microarray: Microarray data analysis in virtual environment Y Yang, JY Choi, K Choi, M Pierce, D Gannon, S Kim 2008 IEEE Fourth International Conference on eScience, 159-165, 2008 | 34 | 2008 |
| A novel k-mer mixture logistic regression for methylation susceptibility modeling of CpG dinucleotides in human gene promoters Y Yang Proceedings of the 2nd ACM Conference on Bioinformatics, Computational …, 2011 | 30 | 2011 |
| Metagenome and metatranscriptome analyses using protein family profiles C Zhong, A Edlund, Y Yang, JS McLean, S Yooseph PLoS Computational Biology 12 (7), e1004991, 2016 | 23 | 2016 |
| SPA: a short peptide assembler for metagenomic data Y Yang, S Yooseph Nucleic acids research 41 (8), e91-e91, 2013 | 17 | 2013 |
| Annotation confidence score for genome annotation: a genome comparison approach Y Yang, D Gilbert, S Kim Bioinformatics 26 (1), 22-29, 2010 | 17 | 2010 |
| GRASP: Guided Reference-based Assembly of Short Peptides C Zhong, Y Yang, S Yooseph Nucleic acids research, 2014 | 15 | 2014 |
| Telomere-to-telomere genome assembly of asparaginase-producing Trichoderma simmonsii D Chung, YM Kwon, Y Yang BMC genomics 22, 1-18, 2021 | 11 | 2021 |
| First draft genome for the sand-hopper Trinorchestia longiramus AK Patra, O Chung, JY Yoo, MS Kim, MG Yoon, JH Choi, Y Yang Scientific Data 7 (1), 85, 2020 | 11 | 2020 |
| SFA-SPA: a suffix array based short peptide assembler for metagenomic data Y Yang, C Zhong, S Yooseph Bioinformatics, 2015 | 9 | 2015 |
| V-lab-protein: Virtual collaborative lab for protein sequence analysis JY Choi, Y Yang, S Kim, D Gannon 2007 IEEE International Conference on Bioinformatics and Biomedicine …, 2007 | 8 | 2007 |
| GRASP2: fast and memory-efficient gene-centric assembly and homolog search for metagenomic sequencing data C Zhong, Y Yang, S Yooseph BMC bioinformatics 20, 1-12, 2019 | 7 | 2019 |
Jeffrey S. McLeanProfessor University of WashingtonVerified email at uw.edu
