Youngik Yang
Youngik Yang
National Marine Biodiversity Institute of Korea
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Genomic and proteomic characterization of “Candidatus Nitrosopelagicus brevis”: An ammonia-oxidizing archaeon from the open ocean
AE Santoro, CL Dupont, RA Richter, MT Craig, P Carini, MR McIlvin, ...
Proceedings of the National Academy of Sciences, 2015
Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum
JS McLean, MJ Lombardo, JH Badger, A Edlund, M Novotny, ...
Proceedings of the National Academy of Sciences 110 (26), E2390-E2399, 2013
Precision-guided antimicrobial peptide as a targeted modulator of human microbial ecology
L Guo, JS McLean, Y Yang, R Eckert, CW Kaplan, P Kyme, O Sheikh, ...
Proceedings of the National Academy of Sciences, 2015
An in vitrobiofilm model system maintaining a highly reproducible species and metabolic diversity approaching that of the human oral microbiome
A Edlund, Y Yang, AP Hall, L Guo, R Lux, X He, KE Nelson, KH Nealson, ...
Microbiome 1, 1-17, 2013
Meta-omics uncover temporal regulation of pathways across oral microbiome genera during in vitro sugar metabolism
A Edlund, Y Yang, S Yooseph, AP Hall, DD Nguyen, PC Dorrestein, ...
ISME J, 2015
A garter snake transcriptome: pyrosequencing, de novo assembly, and sex-specific differences
TS Schwartz, H Tae, Y Yang, K Mockaitis, JL Van Hemert, SR Proulx, ...
BMC genomics 11 (1), 1-17, 2010
Gene discovery in the horned beetle Onthophagus taurus
JH Choi, T Kijimoto, E Snell-Rood, H Tae, Y Yang, AP Moczek, J Andrews
BMC genomics 11 (1), 1-19, 2010
Uncovering complex microbiome activities via metatranscriptomics during 24 hours of oral biofilm assembly and maturation
A Edlund, Y Yang, S Yooseph, X He, W Shi, JS McLean
Microbiome 6 (1), 1-22, 2018
BioVLAB-MMIA: a cloud environment for microRNA and mRNA integrated analysis (MMIA) on Amazon EC2
H Lee, Y Yang, H Chae, S Nam, D Choi, P Tangchaisin, C Herath, ...
IEEE transactions on nanobioscience 11 (3), 266-272, 2012
Biovlab-microarray: Microarray data analysis in virtual environment
Y Yang, JY Choi, K Choi, M Pierce, D Gannon, S Kim
2008 IEEE Fourth International Conference on eScience, 159-165, 2008
A novel k-mer mixture logistic regression for methylation susceptibility modeling of CpG dinucleotides in human gene promoters
Y Yang
Proceedings of the 2nd ACM Conference on Bioinformatics, Computational …, 2011
Metagenome and metatranscriptome analyses using protein family profiles
C Zhong, A Edlund, Y Yang, JS McLean, S Yooseph
PLoS Computational Biology 12 (7), e1004991, 2016
SPA: a short peptide assembler for metagenomic data
Y Yang, S Yooseph
Nucleic acids research 41 (8), e91-e91, 2013
Annotation confidence score for genome annotation: a genome comparison approach
Y Yang, D Gilbert, S Kim
Bioinformatics 26 (1), 22-29, 2010
GRASP: Guided Reference-based Assembly of Short Peptides
C Zhong, Y Yang, S Yooseph
Nucleic acids research, 2014
SFA-SPA: a suffix array based short peptide assembler for metagenomic data
Y Yang, C Zhong, S Yooseph
Bioinformatics, 2015
Telomere-to-telomere genome assembly of asparaginase-producing Trichoderma simmonsii
D Chung, YM Kwon, Y Yang
BMC genomics 22 (1), 1-18, 2021
First draft genome for the sand-hopper Trinorchestia longiramus
AK Patra, O Chung, JY Yoo, MS Kim, MG Yoon, JH Choi, Y Yang
Scientific Data 7 (1), 85, 2020
V-lab-protein: Virtual collaborative lab for protein sequence analysis
JY Choi, Y Yang, S Kim, D Gannon
2007 IEEE International Conference on Bioinformatics and Biomedicine …, 2007
GRASP2: fast and memory-efficient gene-centric assembly and homolog search for metagenomic sequencing data
C Zhong, Y Yang, S Yooseph
BMC bioinformatics 20, 1-12, 2019
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Articles 1–20