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Joana P. Gonçalves
Joana P. Gonçalves
Assistant Professor at TU Delft
Verified email at tudelft.nl - Homepage
Title
Cited by
Cited by
Year
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae
MC Teixeira, PT Monteiro, JF Guerreiro, JP Gonçalves, NP Mira, ...
Nucleic acids research 42 (D1), D161-D166, 2014
2812014
Candidate gene prioritization by network analysis of differential expression using machine learning approaches
D Nitsch, JP Gonçalves, F Ojeda, B De Moor, Y Moreau
BMC bioinformatics 11 (1), 1-16, 2010
1382010
Predicting disease associations via biological network analysis
K Sun, JP Gonçalves, C Larminie, N Pr¾ulj
BMC bioinformatics 15 (1), 1-13, 2014
1092014
BiGGEsTS: integrated environment for biclustering analysis of time series gene expression data
JP Gonçalves, SC Madeira, AL Oliveira
BMC research notes 2 (1), 1-11, 2009
932009
PINTA: a web server for network-based gene prioritization from expression data
D Nitsch, LC Tranchevent, JP Gonçalves, JK Vogt, SC Madeira, Y Moreau
Nucleic Acids Research 39 (suppl 2), W334-W338, 2011
802011
Multiplexed Cas9 targeting reveals genomic location effects and gRNA-based staggered breaks influencing mutation efficiency
S Gisler, JP Gonçalves, W Akhtar, J de Jong, AV Pindyurin, LFA Wessels, M ...
Nature Communications, 2019
622019
Advances and Perspectives for the Human BioMolecular Atlas Program (HuBMAP)
S Jain, L Pei, JM Spraggins, M Angelo, JP Carson, N Gehlenborg, F Ginty, ...
Nature Cell Biology, 2023
442023
Interactogeneous: Disease Gene Prioritization Using Heterogeneous Networks and Full Topology Scores
JP Gonçalves, AP Francisco, Y Moreau, SC Madeira
PLOS ONE 7 (11), e49634, 2012
392012
LateBiclustering: Efficient Heuristic Algorithm for Time-Lagged Bicluster Identification
JP Gonçalves, SC Madeira
IEEE/ACM Transactions on Computational Biology and Bioinformatics, doi:10 …, 2014
232014
TFRank: network-based prioritization of regulatory associations underlying transcriptional responses
JP Gonçalves, AP Francisco, NP Mira, MC Teixeira, I Sá-Correia, ...
Bioinformatics 27 (22), 3149-3157, 2011
222011
POLAR MAPPER: a computational tool for integrated visualization of protein interaction networks and mRNA expression data
JP Gonçalves, M Grãos, AXCN Valente
Journal of The Royal Society Interface 6 (39), 881-896, 2009
202009
AliBiMotif: Integrating alignment and biclustering to unravel Transcription Factor Binding Sites in DNA sequences
JP Gonçalves, Y Moreau, SC Madeira
International journal of data mining and bioinformatics 6 (2), 196-215, 2012
16*2012
Regulatory Snapshots: Integrative Mining of Regulatory Modules from Expression Time Series and Regulatory Networks
JP Gonçalves, RS Aires, AP Francisco, SC Madeira
PloS one 7 (5), e35977, 2012
132012
The chromatin landscape of healthy and injured cell types in the human kidney
DL Gisch, M Brennan, BB Lake, J Basta, MS Keller, RM Ferreira, ...
Nature Communications 15 (433), 2024
62024
Efficient Biclustering Algorithms for identifying transcriptional regulation relationships using time series gene expression data
SC Madeira, JP Gonçalves, AL Oliveira
INESC-ID Tec. Rep. 22/2007, 2007
52007
Overcoming Selection Bias in Synthetic Lethality Prediction
C Seale, Y Tepeli, JP Gonçalves
Bioinformatics 38 (18), 4360–4368, 2022
42022
Precision Medicine in Nephrology: An Integrative Framework of Multidimensional Data in the Kidney Precision Medicine Project
TM El-Achkar, MT Eadon, M Kretzler, J Himmelfarb, KPM Project
American Journal of Kidney Diseases, 2023
12023
ELISL: early-late integrated synthetic lethality prediction in cancer
YI Tepeli, C Seale, JP Gonçalves
Bioinformatics 40 (1), 2023
2023
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Articles 1–18