Christopher Henry

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Citations	12066	7450
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Rick StevensProfessor of Computer Science, University of ChicagoVerified email at ci.uchicago.edu
Janaka N EdirisingheAssistant Scientist, Argonne National Labs / University of Chicago, IL, USAVerified email at anl.gov
Andrew D. HansonHorticultural Sciences Department, University of FloridaVerified email at ufl.edu
Vassily HatzimanikatisAssociate Professor, EPFLVerified email at epfl.ch
José P. FariaAssistant Computational BiologistVerified email at anl.gov
Jack A GilbertUniversity of California, San DiegoVerified email at ucsd.edu
Sam SeaverComputational Scientist, Argonne National LaboratoryVerified email at mcs.anl.gov
James JeffryesPostdoctoral Researcher, Argonne National LaboratoryVerified email at mcs.anl.gov
Valérie de Crécy-LagardDistinguished Professor, Microbiology and Cell Science Dpt, University of FloridaVerified email at ufl.edu
Fangfang XiaScientist, Argonne National LaboratoryVerified email at anl.gov
Veronika VonsteinFellowship for Interpretation of GenomesVerified email at theFIG.info
Eytan RuppinChief, Cancer Data Science Lab (CDSL), NCI/NIHVerified email at nih.gov
Thomas D NiehausAssistant Professor, University of MinnesotaVerified email at umn.edu
Robert OlsonArgonne National LaboratoryVerified email at mcs.anl.gov
Rob EdwardsMatthew Flinders Fellow of Bioinformatics, Flinders University, Adelaide, SA, AustraliaVerified email at flinders.edu.au
Scott DevoidExperimental Computer Systems, Argonne National LaboratoryVerified email at anl.gov
Keith TyoAssociate Professor of Chemical and Biological Engineering, Northwestern UniversityVerified email at northwestern.edu
Uri GophnaThe Shmunis School of Biomedicine and Cancer Research, Tel Aviv UniversityVerified email at tauex.tau.ac.il
Adam FeistUCSD / DTUVerified email at ucsd.edu
Peter D. KarpDirector of the Bioinformatics Research Group, SRI InternationalVerified email at ai.sri.com

Christopher Henry

Computational Biologist, Argonne National Laboratory

Verified email at mcs.anl.gov

Metabolic Modeling and Computational Biology


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A genome‐scale metabolic reconstruction for Escherichia coli K‐12 MG1655 that accounts for 1260 ORFs and thermodynamic information AM Feist, CS Henry, JL Reed, M Krummenacker, AR Joyce, PD Karp, ... Molecular systems biology 3 (1), 121, 2007	1705	2007
Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center AR Wattam, JJ Davis, R Assaf, S Boisvert, T Brettin, C Bun, N Conrad, ... Nucleic acids research 45 (D1), D535-D542, 2017	1399	2017
High-throughput generation, optimization and analysis of genome-scale metabolic models CS Henry, M DeJongh, AA Best, PM Frybarger, B Linsay, RL Stevens Nature biotechnology 28 (9), 977-982, 2010	1128	2010
KBase: the United States department of energy systems biology knowledgebase AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ... Nature biotechnology 36 (7), 566-569, 2018	974	2018
Thermodynamics-based metabolic flux analysis CS Henry, LJ Broadbelt, V Hatzimanikatis Biophysical journal 92 (5), 1792-1805, 2007	705	2007
Competitive and cooperative metabolic interactions in bacterial communities S Freilich, R Zarecki, O Eilam, ES Segal, CS Henry, M Kupiec, U Gophna, ... Nature communications 2 (1), 589, 2011	493	2011
A genomic catalog of Earth’s microbiomes S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ... Nature biotechnology 39 (4), 499-509, 2021	481	2021
Group contribution method for thermodynamic analysis of complex metabolic networks MD Jankowski, CS Henry, LJ Broadbelt, V Hatzimanikatis Biophysical journal 95 (3), 1487-1499, 2008	481	2008
Exploring the diversity of complex metabolic networks V Hatzimanikatis, C Li, JA Ionita, CS Henry, MD Jankowski, LJ Broadbelt Bioinformatics 21 (8), 1603-1609, 2005	416	2005
MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020	287	2020
Genome-scale thermodynamic analysis of Escherichia coli metabolism CS Henry, MD Jankowski, LJ Broadbelt, V Hatzimanikatis Biophysical journal 90 (4), 1453-1461, 2006	274	2006
SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models RK Aziz, S Devoid, T Disz, RA Edwards, CS Henry, GJ Olsen, R Olson, ... PloS one 7 (10), e48053, 2012	220	2012
MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics JG Jeffryes, RL Colastani, M Elbadawi-Sidhu, T Kind, TD Niehaus, ... Journal of cheminformatics 7, 1-8, 2015	211	2015
iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations CS Henry, JF Zinner, MP Cohoon, RL Stevens Genome Biol 10 (6), R69, 2009	200	2009
Discovery and analysis of novel metabolic pathways for the biosynthesis of industrial chemicals: 3‐hydroxypropanoate CS Henry, LJ Broadbelt, V Hatzimanikatis Biotechnology and bioengineering 106 (3), 462-473, 2010	185	2010
Automated genome annotation and metabolic model reconstruction in the SEED and Model SEED S Devoid, R Overbeek, M DeJongh, V Vonstein, AA Best, C Henry Systems metabolic engineering: methods and protocols, 17-45, 2013	162	2013
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes SMD Seaver, F Liu, Q Zhang, J Jeffryes, JP Faria, JN Edirisinghe, ... Nucleic acids research 49 (D1), D575-D588, 2021	133	2021
Metabolic reconstruction and modeling microbial electrosynthesis CW Marshall, DE Ross, KM Handley, PB Weisenhorn, JN Edirisinghe, ... Scientific reports 7 (1), 8391, 2017	114	2017
Computational discovery of biochemical routes to specialty chemicals C Li, CS Henry, MD Jankowski, JA Ionita, V Hatzimanikatis, LJ Broadbelt Chemical engineering science 59 (22-23), 5051-5060, 2004	106	2004
Microbial community metabolic modeling: a community data‐driven network reconstruction CS Henry, HC Bernstein, P Weisenhorn, RC Taylor, JY Lee, J Zucker, ... Journal of cellular physiology 231 (11), 2339-2345, 2016	105	2016

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