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Jie Zheng
Tytuł
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Modeling sample variables with an Experimental Factor Ontology
J Malone, E Holloway, T Adamusiak, M Kapushesky, J Zheng, ...
Bioinformatics 26 (8), 1112-1118, 2010
5392010
The ontology for biomedical investigations
A Bandrowski, R Brinkman, M Brochhausen, MH Brush, B Bug, ...
PloS one 11 (4), e0154556, 2016
3612016
Modeling biomedical experimental processes with OBI
RR Brinkman, M Courtot, D Derom, JM Fostel, Y He, P Lord, J Malone, ...
Journal of biomedical semantics 1, 1-11, 2010
3262010
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center
B Amos, C Aurrecoechea, M Barba, A Barreto, EY Basenko, R Belnap, ...
Nucleic Acids Research 50 (D1), D898-D911, 2022
2792022
EuPathDB: the eukaryotic pathogen genomics database resource
C Aurrecoechea, A Barreto, EY Basenko, J Brestelli, BP Brunk, S Cade, ...
Nucleic acids research 45 (D1), D581-D591, 2017
2072017
Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration
E Ong, Z Xiang, B Zhao, Y Liu, Y Lin, J Zheng, C Mungall, M Courtot, ...
Nucleic acids research 45 (D1), D347-D352, 2017
1492017
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies
R Jackson, N Matentzoglu, JA Overton, R Vita, JP Balhoff, PL Buttigieg, ...
Database 2021, baab069, 2021
1212021
CLO: the cell line ontology
S Sarntivijai, Y Lin, Z Xiang, TF Meehan, AD Diehl, UD Vempati, ...
Journal of biomedical semantics 5, 1-10, 2014
1202014
Characterization of the Drosophila Gene‐Switch system in aging studies: a cautionary tale
L Poirier, A Shane, J Zheng, L Seroude
Aging cell 7 (5), 758-770, 2008
1202008
Differential patterns of apoptosis in response to aging in Drosophila
J Zheng, SW Edelman, G Tharmarajah, DW Walker, SD Pletcher, ...
Proceedings of the National Academy of Sciences 102 (34), 12083-12088, 2005
1042005
The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability
Y He, Z Xiang, J Zheng, Y Lin, JA Overton, E Ong
Journal of biomedical semantics 9, 1-10, 2018
782018
Basic Formal Ontology 2.0: Specification and user’s guide
B Smith, M Almeida, J Bona, M Brochhausen, W Ceusters, M Courtot, ...
National Center for Ontological Research: Buffalo, NY, USA, 50, 2015
742015
Ontorat: automatic generation of new ontology terms, annotations, and axioms based on ontology design patterns
Z Xiang, J Zheng, Y Lin, Y He
Journal of biomedical semantics 6, 1-10, 2015
582015
MicrobiomeDB: a systems biology platform for integrating, mining and analyzing microbiome experiments
FS Oliveira, J Brestelli, S Cade, J Zheng, J Iodice, S Fischer, ...
Nucleic acids research 46 (D1), D684-D691, 2018
522018
Sod2 knockdown in the musculature has whole-organism consequences in Drosophila
I Martin, MA Jones, D Rhodenizer, J Zheng, JM Warrick, L Seroude, ...
Free Radical Biology and Medicine 47 (6), 803-813, 2009
512009
Standardized metadata for human pathogen/vector genomic sequences
VG Dugan, SJ Emrich, GI Giraldo-Calderón, OS Harb, RM Newman, ...
PloS one 9 (6), e99979, 2014
432014
PACAP stimulates transcription of c-Fos and c-Jun and activates the AP-1 transcription factor in rat pancreatic carcinoma cells
H Schäfer, J Zheng, F Gundlach, R Günther, WE Schmidt
Biochemical and biophysical research communications 221 (1), 111-116, 1996
421996
OBIB-a novel ontology for biobanking
M Brochhausen, J Zheng, D Birtwell, H Williams, AM Masci, HJ Ellis, ...
Journal of biomedical semantics 7, 1-9, 2016
412016
Microbiome metadata standards: Report of the national microbiome data collaborative’s workshop and follow-on activities
P Vangay, J Burgin, A Johnston, KL Beck, DC Berrios, K Blumberg, ...
Msystems 6 (1), 10.1128/msystems. 01194-20, 2021
382021
Pituitary adenylate‐cyclase‐activating polypeptide stimulates proto‐oncogene expression and activates the AP‐1 (c‐Fos/c‐Jun) transcription factor in AR4‐2J pancreatic carcinoma …
H Schäfer, J Zheng, F Gundlach, R Günther, EG Siegel, UR Fölsch, ...
European journal of biochemistry 242 (3), 467-476, 1996
341996
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