Vincent Gardeux
Vincent Gardeux
Senior research scientist at EPFL, Lausanne
Zweryfikowany adres z epfl.ch - Strona główna
Tytuł
Cytowane przez
Cytowane przez
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The genetics of transcription factor DNA binding variation
B Deplancke, D Alpern, V Gardeux
Cell 166 (3), 538-554, 2016
2262016
ASAP: a web-based platform for the analysis and interactive visualization of single-cell RNA-seq data
V Gardeux, FPA David, A Shajkofci, PC Schwalie, B Deplancke
Bioinformatics 33 (19), 3123-3125, 2017
652017
BRB-seq: ultra-affordable high-throughput transcriptomics enabled by bulk RNA barcoding and sequencing
D Alpern, V Gardeux, J Russeil, B Mangeat, ACA Meireles-Filho, ...
Genome biology 20 (1), 1-15, 2019
532019
The discriminatory cost of ICD-10-CM transition between clinical specialties: metrics, case study, and mitigating tools
AD Boyd, JJ Li, MD Burton, M Jonen, V Gardeux, I Achour, RQ Luo, ...
Journal of the American Medical Informatics Association 20 (4), 708-717, 2013
512013
Disparate temperature-dependent virus–host dynamics for SARS-CoV-2 and SARS-CoV in the human respiratory epithelium
P V’kovski, M Gultom, JN Kelly, S Steiner, J Russeil, B Mangeat, E Cora, ...
PLoS biology 19 (3), e3001158, 2021
482021
‘N-of-1-pathways’ unveils personal deregulated mechanisms from a single pair of RNA-Seq samples: towards precision medicine
V Gardeux, I Achour, J Li, M Maienschein-Cline, H Li, L Pesce, ...
Journal of the American Medical Informatics Association 21 (6), 1015-1025, 2014
372014
EM323: a line search based algorithm for solving high-dimensional continuous non-linear optimization problems
V Gardeux, R Chelouah, P Siarry, F Glover
Soft Computing 15 (11), 2275-2285, 2011
342011
Unidimensional search for solving continuous high-dimensional optimization problems
V Gardeux, R Chelouah, P Siarry, F Glover
2009 Ninth International Conference on Intelligent Systems Design and …, 2009
302009
GA-KDE-Bayes: an evolutionary wrapper method based on non-parametric density estimation applied to bioinformatics problems.
MFB Wanderley, V Gardeux, R Natowicz, A de Pádua Braga
ESANN, 2013
272013
Conception d'heuristiques d'optimisation pour les problèmes de grande dimension: application à l'analyse de données de puces à ADN
V Gardeux
Université Paris-Est, 2011
272011
Dynamic changes of RNA-sequencing expression for precision medicine: N-of-1-pathways Mahalanobis distance within pathways of single subjects predicts breast cancer survival
AG Schissler, V Gardeux, Q Li, I Achour, H Li, WW Piegorsch, YA Lussier
Bioinformatics 31 (12), i293-i302, 2015
242015
Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle
ET Friman, C Deluz, ACA Meireles-Filho, S Govindan, V Gardeux, ...
Elife 8, e50087, 2019
232019
N-of-1-pathways MixEnrich: advancing precision medicine via single-subject analysis in discovering dynamic changes of transcriptomes
Q Li, AG Schissler, V Gardeux, I Achour, C Kenost, J Berghout, H Li, ...
BMC Medical Genomics 10 (1), 5-16, 2017
222017
A genome-by-environment interaction classifier for precision medicine: personal transcriptome response to rhinovirus identifies children prone to asthma exacerbations
V Gardeux, J Berghout, I Achour, AG Schissler, Q Li, C Kenost, J Li, ...
Journal of the American Medical Informatics Association 24 (6), 1116-1126, 2017
212017
Towards a PBMC “virogram assay” for precision medicine: Concordance between ex vivo and in vivo viral infection transcriptomes
V Gardeux, A Bosco, J Li, MJ Halonen, D Jackson, FD Martinez, ...
Journal of biomedical informatics 55, 94-103, 2015
202015
Concordance of deregulated mechanisms unveiled in underpowered experiments: PTBP1 knockdown case study
V Gardeux, AD Arslan, I Achour, TT Ho, WT Beck, YA Lussier
BMC medical genomics 7 (1), 1-13, 2014
192014
Integrative genomics analyses unveil downstream biological effectors of disease-specific polymorphisms buried in intergenic regions
H Li, I Achour, L Bastarache, J Berghout, V Gardeux, J Li, Y Lee, L Pesce, ...
NPJ genomic medicine 1 (1), 1-12, 2016
172016
Dissecting the brown adipogenic regulatory network using integrative genomics
RN Pradhan, JJ Bues, V Gardeux, PC Schwalie, D Alpern, W Chen, ...
Scientific reports 7 (1), 1-16, 2017
152017
kMEn: Analyzing noisy and bidirectional transcriptional pathway responses in single subjects
Q Li, AG Schissler, V Gardeux, J Berghout, I Achour, C Kenost, H Li, ...
Journal of biomedical informatics 66, 32-41, 2017
152017
Are we able to predict survival in ER-positive HER2-negative breast cancer? A comparison of web-based models
E Laas, P Mallon, M Delomenie, V Gardeux, JY Pierga, P Cottu, ...
British journal of cancer 112 (5), 912-917, 2015
152015
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