Tommi Vatanen

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Curtis HuttenhowerDepartment of Biostatistics, Harvard School of Public HealthZweryfikowany adres z hsph.harvard.edu
Aleksandar David KosticAssistant Professor, Harvard Medical School & Joslin Diabetes CenterZweryfikowany adres z joslin.harvard.edu
Eric Alan FranzosaSenior Research Scientist / Harvard T. H. Chan School of Public HealthZweryfikowany adres z hsph.harvard.edu
Tapani RaikoPrincipal research scientist, AppleZweryfikowany adres z apple.com
Matej OrešičProfessor of Medical Sciences (Systems Medicine), Örebro University & Turku Bioscience CentreZweryfikowany adres z oru.se
Vallo TillmannUniversity of TartuZweryfikowany adres z ut.ee
Moran YassourThe Hebrew University of JerusalemZweryfikowany adres z mail.huji.ac.il
kugathasan, sProfessor of Pediatrics and Human Genetics, Marcus Professor of Pediatric GastroenterologyZweryfikowany adres z emory.edu
Clary ClishSenior Director, Metabolomics, Broad Institute of MIT and HarvardZweryfikowany adres z broadinstitute.org
Outi VaaralaRIA IMED AstraZenecaZweryfikowany adres z astrazeneca.com
Paul C BlaineyBroad Institute and MIT, Department of Biological EngineeringZweryfikowany adres z broadinstitute.org
Yann LeCunChief AI Scientist at Facebook & Silver Professor at the Courant Institute, New York UniversityZweryfikowany adres z cs.nyu.edu
Harri ValpolaAppleZweryfikowany adres z apple.com
Ismo MattilaResearch Scientist, Steno Diabetes CenterZweryfikowany adres z steno.dk
Timo HonkelaUniversity of HelsinkiZweryfikowany adres z helsinki.fi
Eric MalmiResearch Scientist, Google ZürichZweryfikowany adres z google.com
Mikael KuuselaCarnegie Mellon UniversityZweryfikowany adres z andrew.cmu.edu
Alexandra (Sasha) ZhernakovaProfessor of Human Genome and Exposome, University Medical Centre Groningen, The NetherlandsZweryfikowany adres z umcg.nl
Cisca Wijmenga, PhDERC advanced investigator; Professor of Human Genetics, Dept Genetics (MGE), UMCG, Groningen, theZweryfikowany adres z umcg.nl
Marc Jan BonderPostdoc & Team-leader, DKFZZweryfikowany adres z dkfz.de

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Tommi Vatanen

Academy Research Fellow, University of Helsinki

Zweryfikowany adres z helsinki.fi - Strona główna

Human microbiome Bioinformatics Machine learning Computational systems biology Bayesian statistics


Tytuł Sortuj wg cytatów Sortuj wg roku Sortuj wg tytułu	Cytowane przez Cytowane przez	Rok
Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity A Zhernakova, A Kurilshikov, MJ Bonder, EF Tigchelaar, M Schirmer, ... Science 352 (6285), 565-569, 2016	1447	2016
Temporal development of the gut microbiome in early childhood from the TEDDY study CJ Stewart, NJ Ajami, JL O’Brien, DS Hutchinson, DP Smith, MC Wong, ... Nature 562 (7728), 583-588, 2018	1134	2018
Variation in microbiome LPS immunogenicity contributes to autoimmunity in humans T Vatanen, AD Kostic, E d’Hennezel, H Siljander, EA Franzosa, ... Cell 165 (4), 842-853, 2016	1075	2016
Pushing stochastic gradient towards second-order methods–backpropagation learning with transformations in nonlinearities T Vatanen, T Raiko, H Valpola, Y LeCun International Conference on Neural Information Processing, 442-449, 2013	1047	2013
The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes AD Kostic, D Gevers, H Siljander, T Vatanen, T Hyötyläinen, ... Cell host & microbe 17 (2), 260-273, 2015	1029	2015
Gut microbiome structure and metabolic activity in inflammatory bowel disease EA Franzosa, A Sirota-Madi, J Avila-Pacheco, N Fornelos, HJ Haiser, ... Nature microbiology 4 (2), 293-305, 2019	924	2019
Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability M Yassour, T Vatanen, H Siljander, AM Hämäläinen, T Härkönen, ... Science translational medicine 8 (343), 343ra81-343ra81, 2016	775	2016
The effect of host genetics on the gut microbiome MJ Bonder, A Kurilshikov, EF Tigchelaar, Z Mujagic, F Imhann, AV Vila, ... Nature genetics 48 (11), 1407-1412, 2016	626	2016
The human gut microbiome in early-onset type 1 diabetes from the TEDDY study T Vatanen, EA Franzosa, R Schwager, S Tripathi, TD Arthur, K Vehik, ... Nature 562 (7728), 589-594, 2018	550	2018
A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients AB Hall, M Yassour, J Sauk, A Garner, X Jiang, T Arthur, GK Lagoudas, ... Genome medicine 9, 1-12, 2017	393	2017
The super-donor phenomenon in fecal microbiota transplantation BC Wilson, T Vatanen, WS Cutfield, JM O'Sullivan Frontiers in cellular and infection microbiology 9, 2, 2019	253	2019
Structure-based protein function prediction using graph convolutional networks V Gligorijević, PD Renfrew, T Kosciolek, JK Leman, D Berenberg, ... Nature communications 12 (1), 3168, 2021	246	2021
Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children G Zhao, T Vatanen, L Droit, A Park, AD Kostic, TW Poon, H Vlamakis, ... Proceedings of the National Academy of Sciences 114 (30), E6166-E6175, 2017	233	2017
The influence of a short-term gluten-free diet on the human gut microbiome MJ Bonder, EF Tigchelaar, X Cai, G Trynka, MC Cenit, B Hrdlickova, ... Genome medicine 8, 1-11, 2016	228	2016
Dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease KA Shaw, M Bertha, T Hofmekler, P Chopra, T Vatanen, A Srivatsa, ... Genome medicine 8 (1), 1-13, 2016	226	2016
Increased intestinal microbial diversity following fecal microbiota transplant for active Crohn's disease BP Vaughn, T Vatanen, JR Allegretti, A Bai, RJ Xavier, J Korzenik, ... Inflammatory bowel diseases 22 (9), 2182-2190, 2016	190	2016
Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life T Vatanen, DR Plichta, J Somani, PC Münch, TD Arthur, AB Hall, S Rudolf, ... Nature microbiology 4 (3), 470-479, 2019	158	2019
Experimental design and quantitative analysis of microbial community multiomics H Mallick, S Ma, EA Franzosa, T Vatanen, XC Morgan, C Huttenhower Genome biology 18 (1), 1-16, 2017	138	2017
Language Identification of Short Text Segments with N-gram Models. T Vatanen, JJ Väyrynen, S Virpioja LREC, 2010	109	2010
Elevated rates of horizontal gene transfer in the industrialized human microbiome M Groussin, M Poyet, A Sistiaga, SM Kearney, K Moniz, M Noel, J Hooker, ... Cell 184 (8), 2053-2067. e18, 2021	102	2021

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