| aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity S Kuraku, CM Zmasek, O Nishimura, K Katoh Nucleic acids research 41 (W1), W22-W28, 2013 | 696 | 2013 |
| phyloXML: XML for evolutionary biology and comparative genomics MV Han, CM Zmasek BMC bioinformatics 10, 1-6, 2009 | 614 | 2009 |
| The amphioxus genome illuminates vertebrate origins and cephalochordate biology LZ Holland, R Albalat, K Azumi, È Benito-Gutiérrez, MJ Blow, ... Genome research 18 (7), 1100-1111, 2008 | 567 | 2008 |
| ATV: display and manipulation of annotated phylogenetic trees CM Zmasek, SR Eddy Bioinformatics 17 (4), 383-384, 2001 | 367 | 2001 |
| Influenza Research Database: An integrated bioinformatics resource for influenza virus research Y Zhang, BD Aevermann, TK Anderson, DF Burke, G Dauphin, Z Gu, S He, ... Nucleic acids research 45 (D1), D466-D474, 2017 | 329 | 2017 |
| Introducing the bacterial and viral bioinformatics resource center (BV-BRC): a resource combining PATRIC, IRD and ViPR RD Olson, R Assaf, T Brettin, N Conrad, C Cucinell, JJ Davis, ... Nucleic acids research 51 (D1), D678-D689, 2023 | 268 | 2023 |
| A simple algorithm to infer gene duplication and speciation events on a gene tree CM Zmasek, SR Eddy Bioinformatics 17 (9), 821-828, 2001 | 260 | 2001 |
| RIO: analyzing proteomes by automated phylogenomics using resampled inference of orthologs CM Zmasek, SR Eddy BMC bioinformatics 3, 1-19, 2002 | 258 | 2002 |
| Divergent evolution of protein conformational dynamics in dihydrofolate reductase G Bhabha, DC Ekiert, M Jennewein, CM Zmasek, LM Tuttle, G Kroon, ... Nature structural & molecular biology 20 (11), 1243-1249, 2013 | 169 | 2013 |
| Evolution of the human ion channel set TJ Jegla, CM Zmasek, S Batalov, SK Nayak Combinatorial Chemistry & High Throughput Screening 12 (1), 2-23, 2009 | 142 | 2009 |
| GreenPhylDB v2. 0: comparative and functional genomics in plants M Rouard, V Guignon, C Aluome, MA Laporte, G Droc, C Walde, ... Nucleic acids research 39 (suppl_1), D1095-D1102, 2011 | 121 | 2011 |
| A mighty small heart: the cardiac proteome of adult Drosophila melanogaster A Cammarato, CH Ahrens, NN Alayari, E Qeli, J Rucker, MC Reedy, ... PloS one 6 (4), e18497, 2011 | 118 | 2011 |
| Immune system dysfunction and autoimmune disease in mice lacking Emk (Par-1) protein kinase JB Hurov, TS Stappenbeck, CM Zmasek, LS White, SH Ranganath, ... Molecular and cellular biology 21 (9), 3206, 2001 | 104 | 2001 |
| Strong functional patterns in the evolution of eukaryotic genomes revealed by the reconstruction of ancestral protein domain repertoires CM Zmasek, A Godzik Genome biology 12, 1-13, 2011 | 101 | 2011 |
| Activation and specificity of human caspase-10 K Wachmann, C Pop, BJ van Raam, M Drag, PD Mace, SJ Snipas, ... Biochemistry 49 (38), 8307-8315, 2010 | 100 | 2010 |
| Surprising complexity of the ancestral apoptosis network CM Zmasek, Q Zhang, Y Ye, A Godzik Genome biology 8, 1-8, 2007 | 93 | 2007 |
| Domain architecture evolution of pattern-recognition receptors Q Zhang, CM Zmasek, A Godzik Immunogenetics 62, 263-272, 2010 | 92 | 2010 |
| Evolution of the Animal Apoptosis Network CM Zmasek, A Godzik Cold Spring Harbor Perspectives in Biology 5 (3), 2013 | 84 | 2013 |
| TIR domain-containing adaptor SARM is a late addition to the ongoing microbe-host dialog Q Zhang, CM Zmasek, X Cai, A Godzik Developmental & Comparative Immunology, 2011 | 80 | 2011 |
| Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA) J Leebens-Mack, T Vision, E Brenner, JE Bowers, S Cannon, MJ Clement, ... Omics: a journal of integrative biology 10 (2), 231-237, 2006 | 76 | 2006 |
