Ali Sharifi-Zarchi
Ali Sharifi-Zarchi
Assistant Prof. of Bioinformatics and Artificial Intelligence, Sharif University of Technology
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Cited by
Inferring causal molecular networks: empirical assessment through a community-based effort
SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ...
Nature methods 13 (4), 310-318, 2016
A universal and robust integrated platform for the scalable production of human cardiomyocytes from pluripotent stem cells
H Fonoudi, H Ansari, S Abbasalizadeh, MR Larijani, S Kiani, ...
Stem cells translational medicine 4 (12), 1482-1494, 2015
DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanism
A Sharifi-Zarchi, D Gerovska, K Adachi, M Totonchi, H Pezeshk, RJ Taft, ...
BMC genomics 18 (1), 1-21, 2017
Inhibition of TGFβ signaling promotes ground state pluripotency
SN Hassani, M Totonchi, A Sharifi-Zarchi, S Mollamohammadi, M Pakzad, ...
Stem Cell Reviews and Reports 10 (1), 16-30, 2014
Treatment of human embryonic stem cells with different combinations of priming and inducing factors toward definitive endoderm
Y Tahamtani, M Azarnia, A Farrokhi, A Sharifi-Zarchi, N Aghdami, ...
Stem cells and development 22 (9), 1419-1432, 2013
Machine learning and network analysis of molecular dynamics trajectories reveal two chains of red/ox-specific residue interactions in human protein disulfide isomerase
R Karamzadeh, MH Karimi-Jafari, A Sharifi-Zarchi, H Chitsaz, ...
Scientific reports 7 (1), 1-11, 2017
Small RNA sequencing reveals Dlk1-Dio3 locus-embedded MicroRNAs as major drivers of ground-state pluripotency
S Moradi, A Sharifi-Zarchi, A Ahmadi, S Mollamohammadi, A Stubenvoll, ...
Stem cell reports 9 (6), 2081-2096, 2017
Proteome analysis of ground state pluripotency
S Taleahmad, M Mirzaei, LM Parker, SN Hassani, S Mollamohammadi, ...
Scientific reports 5 (1), 1-10, 2015
Draft genome of Dugesia japonica provides insights into conserved regulatory elements of the brain restriction gene nou-darake in planarians
Y An, A Kawaguchi, C Zhao, A Toyoda, A Sharifi-Zarchi, SA Mousavi, ...
Zoological letters 4 (1), 1-12, 2018
DeePathology: deep multi-task learning for inferring molecular pathology from cancer transcriptome
B Azarkhalili, A Saberi, H Chitsaz, A Sharifi-Zarchi
Scientific reports 9 (1), 1-14, 2019
Analysis of gene expression profiles and protein-protein interaction networks in multiple tissues of systemic sclerosis
E Karimizadeh, A Sharifi-Zarchi, H Nikaein, S Salehi, B Salamatian, ...
BMC medical genomics 12 (1), 1-12, 2019
Downregulation of extracellular matrix and cell adhesion molecules in cumulus cells of infertile polycystic ovary syndrome women with and without insulin resistance
F Hassani, S Oryan, P Eftekhari-Yazdi, M Bazrgar, A Moini, N Nasiri, ...
Cell Journal (Yakhteh) 21 (1), 35, 2019
Comparative in vitro evaluation of human dental pulp and follicle stem cell commitment
R Karamzadeh, MB Eslaminejad, A Sharifi-Zarchi
Cell Journal (Yakhteh) 18 (4), 609, 2017
Down-regulation of miR-200c and up-regulation of miR-30c target both stemness and metastasis genes in breast cancer
M Rahimi, A Sharifi-Zarchi, N Zarghami, L Geranpayeh, M Ebrahimi, ...
Cell Journal (Yakhteh) 21 (4), 467, 2020
The assessment of efficient representation of drug features using deep learning for drug repositioning
M Moridi, M Ghadirinia, A Sharifi-Zarchi, F Zare-Mirakabad
BMC bioinformatics 20 (1), 1-11, 2019
An integrated analysis to predict micro‐RNAs targeting both stemness and metastasis in breast cancer stem cells
M Rahimi, A Sharifi‐Zarchi, J Firouzi, M Azimi, N Zarghami, E Alizadeh, ...
Journal of cellular and molecular medicine 23 (4), 2442-2456, 2019
Defining microRNA signatures of hair follicular stem and progenitor cells in healthy and androgenic alopecia patients
P Mohammadi, MA Nilforoushzadeh, KK Youssef, A Sharifi-Zarchi, ...
Journal of dermatological science 101 (1), 49-57, 2021
The metabolic network model of primed/naive human embryonic stem cells underlines the importance of oxidation-reduction potential and tryptophan metabolism in primed pluripotency
M Yousefi, SA Marashi, A Sharifi-Zarchi, S Taleahmad
Cell & bioscience 9 (1), 1-12, 2019
Genome-wide DNA methylation profiling in ectopic and eutopic of endometrial tissues
N Barjaste, M Shahhoseini, P Afsharian, A Sharifi-Zarchi, ...
Journal of Assisted Reproduction and Genetics 36 (8), 1743-1752, 2019
Blockage of the epithelial-to-mesenchymal transition is required for embryonic stem cell derivation
M Totonchi, SN Hassani, A Sharifi-Zarchi, N Tapia, K Adachi, J Arand, ...
Stem cell reports 9 (4), 1275-1290, 2017
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