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Howard M Salis
Howard M Salis
Other namesHoward Salis
Professor of Biological Engineering and Chemical Engineering, Penn State University
Verified email at psu.edu - Homepage
Title
Cited by
Cited by
Year
Automated design of synthetic ribosome binding sites to control protein expression
HM Salis, EA Mirsky, CA Voigt
Nature biotechnology 27 (10), 946-950, 2009
20232009
A synthetic genetic edge detection program
JJ Tabor, HM Salis, ZB Simpson, AA Chevalier, A Levskaya, EM Marcotte, ...
Cell 137 (7), 1272-1281, 2009
6022009
Translation rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream standby sites
A Espah Borujeni, AS Channarasappa, HM Salis
Nucleic acids research 42 (4), 2646-2659, 2014
5292014
The ribosome binding site calculator
HM Salis
Methods in enzymology 498, 19-42, 2011
4872011
Accurate hybrid stochastic simulation of a system of coupled chemical or biochemical reactions
H Salis, Y Kaznessis
The Journal of chemical physics 122 (5), 2005
4262005
Efficient Search, Mapping, and Optimization of Multi-protein Genetic Systems in Diverse Bacteria
I Farasat, M Kushwaha, J Collens, M Easterbrook, M Guido, HM Salis
Molecular Systems Biology 10 (6), 2014
2762014
Rational design of a synthetic Entner–Doudoroff pathway for improved and controllable NADPH regeneration
CY Ng, I Farasat, CD Maranas, HM Salis
Metabolic engineering 29, 86-96, 2015
2092015
Automated physics-based design of synthetic riboswitches from diverse RNA aptamers
A Espah Borujeni, DM Mishler, J Wang, W Huso, HM Salis
Nucleic acids research 44 (1), 1-13, 2016
1682016
Translation initiation is controlled by RNA folding kinetics via a ribosome drafting mechanism
A Espah Borujeni, HM Salis
Journal of the American Chemical Society 138 (22), 7016-7023, 2016
1532016
Kinetic buffering of cross talk between bacterial two-component sensors
ES Groban, EJ Clarke, HM Salis, SM Miller, CA Voigt
Journal of molecular biology 390 (3), 380-393, 2009
1452009
Precise quantification of translation inhibition by mRNA structures that overlap with the ribosomal footprint in N-terminal coding sequences
A Espah Borujeni, D Cetnar, I Farasat, A Smith, N Lundgren, HM Salis
Nucleic acids research 45 (9), 5437-5448, 2017
1422017
Reversing methanogenesis to capture methane for liquid biofuel precursors
VWC Soo, MJ McAnulty, A Tripathi, F Zhu, L Zhang, E Hatzakis, PB Smith, ...
Microbial cell factories 15, 1-14, 2016
1382016
A portable expression resource for engineering cross-species genetic circuits and pathways
M Kushwaha, HM Salis
Nature communications 6 (1), 7832, 2015
1282015
Simultaneous repression of multiple bacterial genes using nonrepetitive extra-long sgRNA arrays
AC Reis, SM Halper, GE Vezeau, DP Cetnar, A Hossain, PR Clauer, ...
Nature biotechnology 37 (11), 1294-1301, 2019
1252019
An automated model test system for systematic development and improvement of gene expression models
AC Reis, HM Salis
ACS Synthetic Biology, 2020
1242020
Multiscale Hy3S: Hybrid stochastic simulation for supercomputers
H Salis, V Sotiropoulos, YN Kaznessis
BMC bioinformatics 7, 1-21, 2006
1192006
A biophysical model of CRISPR/Cas9 activity for rational design of genome editing and gene regulation
I Farasat, HM Salis
PLoS computational biology 12 (1), e1004724, 2016
1162016
A predictive biophysical model of translational coupling to coordinate and control protein expression in bacterial operons
T Tian, HM Salis
Nucleic acids research 43 (14), 7137-7151, 2015
1002015
Automated design of thousands of nonrepetitive parts for engineering stable genetic systems
A Hossain, E Lopez, SM Halper, DP Cetnar, AC Reis, D Strickland, ...
Nature biotechnology 38 (12), 1466-1475, 2020
922020
An equation-free probabilistic steady-state approximation: dynamic application to the stochastic simulation of biochemical reaction networks
H Salis, YN Kaznessis
The Journal of chemical physics 123 (21), 2005
892005
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