Vijay Ramani
Vijay Ramani
Sandler Fellow, UCSF
Verified email at ucsf.edu - Homepage
Title
Cited by
Cited by
Year
Comprehensive single-cell transcriptional profiling of a multicellular organism
J Cao, JS Packer, V Ramani, DA Cusanovich, C Huynh, R Daza, X Qiu, ...
Science 357 (6352), 661-667, 2017
5982017
Massively multiplex single-cell Hi-C
V Ramani, X Deng, R Qiu, KL Gunderson, FJ Steemers, CM Disteche, ...
Nature methods 14 (3), 263-266, 2017
2932017
Joint profiling of chromatin accessibility and gene expression in thousands of single cells
J Cao, DA Cusanovich, V Ramani, D Aghamirzaie, HA Pliner, AJ Hill, ...
Science 361 (6409), 1380-1385, 2018
2712018
Bipartite structure of the inactive mouse X chromosome
X Deng, W Ma, V Ramani, A Hill, F Yang, F Ay, JB Berletch, CA Blau, ...
Genome biology 16 (1), 1-21, 2015
1712015
High-throughput determination of RNA structure by proximity ligation
V Ramani, R Qiu, J Shendure
Nature biotechnology 33 (9), 980-984, 2015
762015
Mapping 3D genome architecture through in situ DNase Hi-C
V Ramani, DA Cusanovich, RJ Hause, W Ma, R Qiu, X Deng, CA Blau, ...
Nature protocols 11 (11), 2104-2121, 2016
672016
Dynamics of genome reorganization during human cardiogenesis reveal an RBM20-dependent splicing factory
A Bertero, PA Fields, V Ramani, G Bonora, GG Yardimci, H Reinecke, ...
Nature communications 10 (1), 1-19, 2019
522019
Orientation-dependent Dxz4 contacts shape the 3D structure of the inactive X chromosome
G Bonora, X Deng, H Fang, V Ramani, R Qiu, JB Berletch, GN Filippova, ...
Nature communications 9 (1), 1-17, 2018
372018
Understanding spatial genome organization: methods and insights
V Ramani, J Shendure, Z Duan
Genomics, proteomics & bioinformatics 14 (1), 7-20, 2016
362016
Massively multiplex chemical transcriptomics at single-cell resolution
SR Srivatsan, JL McFaline-Figueroa, V Ramani, L Saunders, J Cao, ...
Science 367 (6473), 45-51, 2020
312020
Sci-Hi-C: a single-cell Hi-C method for mapping 3D genome organization in large number of single cells
V Ramani, X Deng, R Qiu, C Lee, CM Disteche, WS Noble, J Shendure, ...
Methods 170, 61-68, 2020
242020
High sensitivity profiling of chromatin structure by MNase-SSP
V Ramani, R Qiu, J Shendure
Cell reports 26 (9), 2465-2476. e4, 2019
112019
Capturing cell type-specific chromatin compartment patterns by applying topic modeling to single-cell Hi-C data
HJ Kim, GG Yardımcı, G Bonora, V Ramani, J Liu, R Qiu, C Lee, J Hesson, ...
PLoS Computational Biology 16 (9), e1008173, 2020
10*2020
Massively multiplex single-molecule oligonucleosome footprinting
NJ Abdulhay, CP McNally, LJ Hsieh, S Kasinathan, A Keith, LS Estes, ...
Elife 9, e59404, 2020
52020
Unsupervised manifold alignment for single-cell multi-omics data
R Singh, P Demetci, G Bonora, V Ramani, C Lee, H Fang, Z Duan, ...
Proceedings of the 11th ACM International Conference on Bioinformatics …, 2020
52020
Smash and DASH with Cas9
V Ramani, J Shendure
Genome biology 17 (1), 1-3, 2016
12016
Small molecule activation of the LKB1 tumor suppressor
DC Mitchell, J Liu, Z Wang, C He, L Ding, M Adler, LAL Wang, A Keith, ...
Cancer Research 80 (16 Supplement), 5228-5228, 2020
2020
MLX balances metabolism and stress to suppress apoptosis and maintain spermatogenesis
P Carroll, PF Cheng, BW Freie, S Kasinathan, H Gu, T Hedrich, ...
bioRxiv, 2020
2020
Single-cell landscape of nuclear configuration and gene expression during stem cell differentiation and X inactivation
G Bonora, V Ramani, R Singh, H Fang, D Jackson, S Srivatsan, R Qiu, ...
bioRxiv, 2020
2020
Massively parallel analysis of nucleic acid strucure
V Ramani
2017
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Articles 1–20