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Matthieu Vignes
Tytuł
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Gene regulatory network reconstruction using Bayesian networks, the Dantzig Selector, the Lasso and their meta-analysis
M Vignes, J Vandel, D Allouche, N Ramadan-Alban, C Cierco-Ayrolles, ...
PloS one 6 (12), e29165, 2011
1312011
The dynamics of root meristem distribution in the soil
L Dupuy, M Vignes, BM McKenzie, PJ White
Plant, cell & environment 33 (3), 358-369, 2010
452010
Gene clustering via integrated Markov models combining individual and pairwise features
M Vignes, F Forbes
IEEE/ACM Transactions on Computational Biology and Bioinformatics 6 (2), 260-270, 2008
352008
Gene regulatory networks: a primer in biological processes and statistical modelling
O Angelin-Bonnet, PJ Biggs, M Vignes
Gene regulatory networks: Methods and protocols, 347-383, 2019
232019
Bridging physiological and evolutionary time‐scales in a gene regulatory network
G Marchand, VA Huynh‐Thu, NC Kane, S Arribat, D Varès, D Rengel, ...
New Phytologist 203 (2), 685-696, 2014
192014
A multi-objective genetic algorithm to find active modules in multiplex biological networks
EM Novoa-del-Toro, E Mezura-Montes, M Vignes, M Térézol, F Magdinier, ...
PLoS computational biology 17 (8), e1009263, 2021
142021
A model-based approach to gene clustering with missing observation reconstruction in a Markov random field framework
J Blanchet, M Vignes
Journal of Computational Biology 16 (3), 475-486, 2009
142009
Identifying health status in grazing dairy cows from milk mid-infrared spectroscopy by using machine learning methods
B Contla Hernández, N Lopez-Villalobos, M Vignes
Animals 11 (8), 2154, 2021
132021
The African swine fever modelling challenge: Model comparison and lessons learnt
P Ezanno, S Picault, S Bareille, G Beaunée, GJ Boender, EA Dankwa, ...
Epidemics 40, 100615, 2022
122022
Exact and approximate inference in graphical models: variable elimination and beyond
N Peyrard, MJ Cros, S de Givry, A Franc, S Robin, R Sabbadin, T Schiex, ...
arXiv preprint arXiv:1506.08544, 2015
122015
Sparse regression and support recovery with L2-Boosting algorithms
M Champion, C Cierco-Ayrolles, S Gadat, M Vignes
Journal of Statistical Planning and Inference 155, 19-41, 2014
122014
A panel of learning methods for the reconstruction of gene regulatory networks in a systems genetics context
D Allouche, C Cierco-Ayrolles, S Givry, G Guillermin, B Mangin, T Schiex, ...
Gene Network Inference: Verification of Methods for Systems Genetics Data, 9-31, 2014
122014
An algorithm for the simulation of the growth of root systems on deformable domains
LX Dupuy, M Vignes
Journal of theoretical biology 310, 164-174, 2012
122012
Inferring networks from multiple samples with consensus lasso
N Villa-Vialaneix, M Vignes, N Viguerie, MS Cristobal
Quality technology & quantitative management 11 (1), 39-60, 2014
102014
Inferring large graphs using -penalized likelihood
M Champion, V Picheny, M Vignes
Statistics and Computing 28 (4), 905-921, 2018
92018
Exact or approximate inference in graphical models: why the choice is dictated by the treewidth, and how variable elimination can be exploited
N Peyrard, MJ Cros, S de Givry, A Franc, S Robin, R Sabbadin, T Schiex, ...
Australian & New Zealand Journal of Statistics 61 (2), 89-133, 2019
62019
Infrared spectroscopy of serum fails to identify early biomarker changes in an equine model of traumatic osteoarthritis
L Panizzi, M Vignes, KE Dittmer, MR Waterland, CW Rogers, H Sano, ...
Osteoarthritis and Cartilage Open 4 (4), 100297, 2022
52022
Causal queries from observational data in biological systems via Bayesian networks: an empirical study in small networks
A White, M Vignes
Gene Regulatory Networks: Methods and Protocols, 111-142, 2019
52019
Extended Bayesian scores for reconstructing gene regulatory networks
J Vandel, B Mangin, M Vignes, S de Givry
ECCS-10 workshop on graphical models for reasoning on biological systems …, 2010
52010
Combined expression data with missing values and gene interaction network analysis: a Markovian integrated approach
J Blanchet, M Vignes
2007 IEEE 7th International Symposium on BioInformatics and BioEngineering …, 2007
52007
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