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Mateusz Chiliński
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From DNA human sequence to the chromatin higher order organisation and its biological meaning: Using biomolecular interaction networks to understand the influence of structural …
M Chiliński, K Sengupta, D Plewczynski
Seminars in Cell & Developmental Biology, 2022
172022
3DGenBench: a web-server to benchmark computational models for 3D Genomics
Nucleic Acids Research 50 (W1), W4-W12, 2022
82022
Multi-scale phase separation by explosive percolation with single-chromatin loop resolution
K Sengupta, M Denkiewicz, M Chiliński, T Szczepińska, AF Mollah, ...
Computational and Structural Biotechnology Journal 20, 3591-3603, 2022
42022
Prediction of chromatin looping using deep hybrid learning (DHL)
M Chiliński, AK Halder, D Plewczynski
Quantitative Biology 11 (2), 155-162, 2023
32023
ConsensuSV—from the whole-genome sequencing data to the complete variant list
M Chiliński, D Plewczynski
Bioinformatics 38 (24), 5440-5442, 2022
32022
Enhanced performance of gene expression predictive models with protein-mediated spatial chromatin interactions
M Chiliński, J Lipiński, A Agarwal, Y Ruan, D Plewczynski
Scientific Reports 13 (1), 11693, 2023
22023
Hematopoietic stem cells undergo a lymphoid to myeloid switch in early stages of emergency granulopoiesis
K Vanickova, M Milosevic, I Ribeiro Bas, M Burocziova, A Yokota, ...
The EMBO Journal 42 (23), e113527, 2023
12023
Chromatin Image-driven modelling
M Kadlof, K Banecki, M Chiliński, D Plewczynski
Methods, 2024
2024
HiCDiffusion-diffusion-enhanced, transformer-based prediction of chromatin interactions from DNA sequences
M Chiliński, D Plewczynski
bioRxiv, 2024.02. 01.578389, 2024
2024
Consensus-Based Identification and Comparative Analysis of Structural Variants and Their Influence on 3D Genome Structure Using Long- and Short-Read Sequencing Technologies in …
M Chilinski, S Gadakh, K Sengupta, K Jodkowska, N Zawrotna, J Gawor, ...
Proceedings of International Conference on Frontiers in Computing and …, 2022
2022
FGVC8 based foliar diseases identification with use of multi-label classifiers
M Chiliński, P Góralewski, T Lehmann, A Nowacki, J Stypułkowska
International Journal of Computer Information Systems and Industrial …, 2022
2022
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Articles 1–11