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Tomasz Krzysztof Wirecki
Tomasz Krzysztof Wirecki
Postdoctoral Researcher, Institute of Molecular and Cell Biology in Warsaw
Verified email at iimcb.gov.pl - Homepage
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Cited by
Cited by
Year
MODOMICS: a database of RNA modification pathways. 2017 update
P Boccaletto, MA Machnicka, E Purta, P Piątkowski, B Bagiński, ...
Nucleic acids research 46 (D1), D303-D307, 2018
11722018
Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements
I Manfredonia, C Nithin, A Ponce-Salvatierra, P Ghosh, TK Wirecki, ...
Nucleic Acids Research, 2020
119*2020
A unified coarse-grained model of biological macromolecules based on mean-field multipole–multipole interactions
A Liwo, M Baranowski, C Czaplewski, E Gołaś, Y He, D Jagieła, P Krupa, ...
Journal of molecular modeling 20 (8), 1-15, 2014
1022014
WeFold: a coopetition for protein structure prediction
GA Khoury, A Liwo, F Khatib, H Zhou, G Chopra, J Bacardit, LO Bortot, ...
Proteins: Structure, Function, and Bioinformatics 82 (9), 1850-1868, 2014
662014
Lessons from application of the UNRES force field to predictions of structures of CASP10 targets
Y He, MA Mozolewska, P Krupa, AK Sieradzan, TK Wirecki, A Liwo, ...
Proceedings of the National Academy of Sciences 110 (37), 14936-14941, 2013
592013
A maximum-likelihood approach to force-field calibration
B Zaborowski, D Jagieła, C Czaplewski, A Hałabis, A Lewandowska, ...
Journal of chemical information and modeling 55 (9), 2050-2070, 2015
252015
RNArchitecture: a database and a classification system of RNA families, with a focus on structural information
P Boccaletto, M Magnus, C Almeida, A Żyła, A Astha, R Pluta, B Bagiński, ...
Nucleic acids research 46 (D1), D202-D205, 2018
232018
An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12
C Keasar, LJ McGuffin, B Wallner, G Chopra, B Adhikari, D Bhattacharya, ...
Scientific reports 8 (1), 1-18, 2018
192018
RNAProbe: a web server for normalization and analysis of RNA structure probing data
TK Wirecki, K Merdas, A Bernat, MJ Boniecki, JM Bujnicki, F Stefaniak
Nucleic Acids Research 48 (W1), W292-W299, 2020
82020
Modeling of Three-Dimensional RNA Structures Using SimRNA
TK Wirecki, C Nithin, S Mukherjee, JM Bujnicki, MJ Boniecki
Protein Structure Prediction, 103-125, 2020
52020
Modeling the Structure, Dynamics, and Transformations of Proteins with the UNRES Force Field
AK Sieradzan, C Czaplewski, P Krupa, MA Mozolewska, AS Karczyńska, ...
Protein Folding, 399-416, 2022
22022
Structure prediction of the druggable fragments in SARS-CoV-2 untranslated regions
J Gumna, M Antczak, RW Adamiak, JM Bujnicki, SJ Chen, F Ding, ...
bioRxiv, 2021
22021
Microscopic Physics-Based Models of Proteins and Nucleic Acids: UNRES and NARES
M Baranowski, C Czaplewski, EI Gołaś, Y He, D Jagieła, P Krupa, A Liwo, ...
Coarse-Grained Modeling of Biomolecules, 67-120, 2017
12017
Computational Modeling Methods for 3D Structure Prediction of Ribozymes
P Ghosh, C Nithin, A Joshi, F Stefaniak, TK Wirecki, JM Bujnicki
Ribozymes 2, 861-881, 2021
2021
Riboswitch-ligand structure determination using an integrative structural biology approach
A Ponce-Salvatierra, R Pluta, E Skowronek, M Orlowska, B Baginski, ...
FEBS OPEN BIO 9, 243-243, 2019
2019
Molecular Dynamics and Monte Carlo methods and their extensions for coarse-grained simulations of polypeptide folding
T Wirecki
Laboratory of Simulation of Polymers, 2016
2016
Coarse-grained approach to protein structure and dynamics
HA Scheraga, A Liwo, Y He, C Czaplewski, S Oldziej, M Makowski, ...
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 246, 2013
2013
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