Agnieszka Danek
Agnieszka Danek
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Genome compression: a novel approach for large collections
S Deorowicz, A Danek, S Grabowski
Bioinformatics 29 (20), 2572-2578, 2013
GDC 2: Compression of large collections of genomes
S Deorowicz, A Danek, M Niemiec
Scientific reports 5, 2015
Indexes of large genome collections on a PC
A Danek, S Deorowicz, S Grabowski
PloS one 9 (10), e109384, 2014
Evaluation and integration of functional annotation pipelines for newly sequenced organisms: the potato genome as a test case
D Amar, I Frades, A Danek, T Goldberg, SK Sharma, PE Hedley, ...
BMC Plant Biology 14 (1), 329, 2014
Kmer-db: instant evolutionary distance estimation
S Deorowicz, A Gudyś, M Długosz, M Kokot, A Danek
Bioinformatics 35 (1), 133-136, 2018
GTC: how to maintain huge genotype collections in a compressed form
A Danek, S Deorowicz
Bioinformatics 34 (11), 1834-1840, 2018
Engaging the dynamics of trust in computational trust and reputation systems
A Danek, J Urbano, AP Rocha, E Oliveira
KES International Symposium on Agent and Multi-Agent Systems: Technologies …, 2010
GTShark: genotype compression in large projects
S Deorowicz, A Danek
Bioinformatics 35 (22), 4791-4793, 2019
Inter-population Differences in Retrogene Loss and Expression in Humans
M Kabza, MR Kubiak, A Danek, W Rosikiewicz, S Deorowicz, A Polański, ...
PLOS Genet 11 (10), e1005579, 2015
AGC: compact representation of assembled genomes with fast queries and updates
S Deorowicz, A Danek, H Li
Bioinformatics 39 (3), btad097, 2023
VCFShark: how to squeeze a VCF file
S Deorowicz, A Danek, M Kokot
Bioinformatics 37 (19), 3358-3360, 2021
Application of the burrows-wheeler transform for searching for approximate tandem repeats
A Danek, R Pokrzywa, I Makałowska, A Polański
IAPR International Conference on Pattern Recognition in Bioinformatics, 255-266, 2012
Bit-parallel algorithms for the merged longest common subsequence problem
S Deorowicz, A Danek
International Journal of Foundations of Computer Science 24 (08), 1281-1298, 2013
Finding Approximate Tandem Repeats with the Burrows-Wheeler Transform
A Danek, R Pokrzywa
International Journal of Medical and Biological Sciences 6, 8-12, 2012
Bit-Parallel Algorithm for the Block Variant of the Merged Longest Common Subsequence Problem
A Danek, S Deorowicz
Man-Machine Interactions 3, 173-181, 2014
Algorithms for analysis of genomic data in compressed domain
A Danek
Supplementary information GDC 2: Compression of large collections of genomes
S Deorowicz, A Danek, M Niemiec
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