Francisco M Couto
Francisco M Couto
LASIGE, Departamento de Informática, Faculdade de Ciências, Universidade de Lisboa, Portugal
Verified email at di.fc.ul.pt - Homepage
Title
Cited by
Cited by
Year
Semantic similarity in biomedical ontologies
C Pesquita, D Faria, AO Falcao, P Lord, FM Couto
PLoS comput biol 5 (7), e1000443, 2009
7592009
Metrics for GO based protein semantic similarity: a systematic evaluation
C Pesquita, D Faria, H Bastos, AEN Ferreira, AO Falcão, FM Couto
BMC bioinformatics 9 (S5), S4, 2008
3242008
Measuring semantic similarity between Gene Ontology terms
FM Couto, MJ Silva, PM Coutinho
Data & knowledge engineering 61 (1), 137-152, 2007
2672007
Facts from text—is text mining ready to deliver?
D Rebholz-Schuhmann, H Kirsch, F Couto
PLoS Biol 3 (2), e65, 2005
1892005
The agreementmakerlight ontology matching system
D Faria, C Pesquita, E Santos, M Palmonari, IF Cruz, FM Couto
OTM Confederated International Conferences" On the Move to Meaningful …, 2013
1862013
Semantic similarity over the gene ontology: family correlation and selecting disjunctive ancestors
FM Couto, MJ Silva, PM Coutinho
Proceedings of the 14th ACM international conference on Information and …, 2005
1342005
The CHEMDNER corpus of chemicals and drugs and its annotation principles
M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ...
Journal of cheminformatics 7 (1), 1-17, 2015
1162015
Evaluating gobased semantic similarity measures
C Pesquita, D Faria, H Bastos, A Falcão, F Couto
Proc. 10th Annual Bio-Ontologies Meeting 2007, 37-40, 2007
1162007
GOAnnotator: linking protein GO annotations to evidence text
F Couto, M Silva, V Lee, E Dimmer, E Camon, R Apweiler, H Kirsch, ...
Journal of Biomedical Discovery and Collaboration 1 (1), 19, 2006
782006
Finding genomic ontology terms in text using evidence content
F Couto, M Silva, P Coutinho
BMC bioinformatics 6 (Suppl 1), S21, 2005
752005
Disjunctive shared information between ontology concepts: application to Gene Ontology
FM Couto, MJ Silva
Journal of biomedical semantics 2 (1), 5, 2011
712011
Using AgreementMaker to align ontologies for OAEI 2011
IF Cruz, C Stroe, F Caimi, A Fabiani, C Pesquita, FM Couto, M Palmonari
ISWC international workshop on ontology matching (OM) 814, 114-121, 2011
622011
Implementation of a functional semantic similarity measure between gene-products
FM Couto, MJ Silva, PM Coutinho
Department of Informatics, University of Lisbon, 2003
622003
The semantic web in translational medicine: current applications and future directions
CM Machado, D Rebholz-Schuhmann, AT Freitas, FM Couto
Briefings in bioinformatics 16 (1), 89-103, 2015
602015
CESSM: collaborative evaluation of semantic similarity measures
C Pesquita, D Pessoa, D Faria, F Couto
JB2009: challenges in bioinformatics 157, 190, 2009
592009
Ontology alignment repair through modularization and confidence-based heuristics
E Santos, D Faria, C Pesquita, FM Couto
PloS one 10 (12), e0144807, 2015
582015
Semantic similarity for automatic classification of chemical compounds
JD Ferreira, FM Couto
PLoS Comput Biol 6 (9), e1000937, 2010
572010
AgreementMakerLight results for OAEI 2013.
D Faria, C Pesquita, E Santos, IF Cruz, FM Couto
OM, 101-108, 2013
562013
Automatic concept recognition using the human phenotype ontology reference and test suite corpora
T Groza, S Köhler, S Doelken, N Collier, A Oellrich, D Smedley, FM Couto, ...
Database 2015, 2015
532015
To repair or not to repair: reconciling correctness and coherence in ontology reference alignments
C Pesquita, D Faria, E Santos, FM Couto
Proc. 8th ISWC ontology matching workshop (OM), Sydney (AU), page this volume, 2013
492013
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