| QIIME allows analysis of high-throughput community sequencing data JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ... Nature methods 7 (5), 335-336, 2010 | 20720 | 2010 |
| Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms JG Caporaso, CL Lauber, WA Walters, D Berg-Lyons, J Huntley, N Fierer, ... The ISME journal 6 (8), 1621-1624, 2012 | 4659 | 2012 |
| Human gut microbiome viewed across age and geography T Yatsunenko, FE Rey, MJ Manary, I Trehan, MG Dominguez-Bello, ... nature 486 (7402), 222-227, 2012 | 4595 | 2012 |
| Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample JG Caporaso, CL Lauber, WA Walters, D Berg-Lyons, CA Lozupone, ... Proceedings of the national academy of sciences 108 (Supplement 1), 4516-4522, 2011 | 4160 | 2011 |
| Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences MGI Langille, J Zaneveld, JG Caporaso, D McDonald, D Knights, ... Nature biotechnology 31 (9), 814-821, 2013 | 4100 | 2013 |
| PyNAST: a flexible tool for aligning sequences to a template alignment JG Caporaso, K Bittinger, FD Bushman, TZ DeSantis, GL Andersen, ... Bioinformatics 26 (2), 266-267, 2010 | 2917 | 2010 |
| Soil bacterial and fungal communities across a pH gradient in an arable soil J Rousk, E Bĺĺth, PC Brookes, CL Lauber, C Lozupone, JG Caporaso, ... The ISME journal 4 (10), 1340-1351, 2010 | 1996 | 2010 |
| Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing NA Bokulich, S Subramanian, JJ Faith, D Gevers, JI Gordon, R Knight, ... Nature methods 10 (1), 57-59, 2013 | 1710 | 2013 |
| Cross-biome metagenomic analyses of soil microbial communities and their functional attributes N Fierer, JW Leff, BJ Adams, UN Nielsen, ST Bates, CL Lauber, S Owens, ... Proceedings of the National Academy of Sciences 109 (52), 21390-21395, 2012 | 986 | 2012 |
| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 900* | 2019 |
| Moving pictures of the human microbiome JG Caporaso, CL Lauber, EK Costello, D Berg-Lyons, A Gonzalez, ... Genome biology 12 (5), 1-8, 2011 | 829 | 2011 |
| Examining the global distribution of dominant archaeal populations in soil ST Bates, D Berg-Lyons, JG Caporaso, WA Walters, R Knight, N Fierer The ISME journal 5 (5), 908-917, 2011 | 828 | 2011 |
| Using QIIME to analyze 16S rRNA gene sequences from microbial communities J Kuczynski, J Stombaugh, WA Walters, A González, JG Caporaso, ... Current protocols in microbiology 27 (1), 1E. 5.1-1E. 5.20, 2012 | 781 | 2012 |
| Defining seasonal marine microbial community dynamics JA Gilbert, JA Steele, JG Caporaso, L Steinbrück, J Reeder, B Temperton, ... The ISME journal 6 (2), 298-308, 2012 | 686 | 2012 |
| Cohabiting family members share microbiota with one another and with their dogs SJ Song, C Lauber, EK Costello, CA Lozupone, G Humphrey, ... elife 2, e00458, 2013 | 645 | 2013 |
| A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017 | 642 | 2017 |
| Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes H Chu, N Fierer, CL Lauber, JG Caporaso, R Knight, P Grogan Environmental microbiology 12 (11), 2998-3006, 2010 | 503 | 2010 |
| Advancing our understanding of the human microbiome using QIIME JA Navas-Molina, JM Peralta-Sánchez, A González, PJ McMurdie, ... Methods in enzymology 531, 371-444, 2013 | 456* | 2013 |
| The under-recognized dominance of Verrucomicrobia in soil bacterial communities GT Bergmann, ST Bates, KG Eilers, CL Lauber, JG Caporaso, WA Walters, ... Soil Biology and Biochemistry 43 (7), 1450-1455, 2011 | 450 | 2011 |
| The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome D McDonald, JC Clemente, J Kuczynski, JR Rideout, J Stombaugh, ... Gigascience 1 (1), 2047-217X-1-7, 2012 | 441 | 2012 |
