J Gregory Caporaso
Title
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Cited by
Year
QIIME allows analysis of high-throughput community sequencing data
JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ...
Nature methods 7 (5), 335-336, 2010
243302010
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
JG Caporaso, CL Lauber, WA Walters, D Berg-Lyons, J Huntley, N Fierer, ...
The ISME journal 6 (8), 1621-1624, 2012
55482012
Human gut microbiome viewed across age and geography
T Yatsunenko, FE Rey, MJ Manary, I Trehan, MG Dominguez-Bello, ...
nature 486 (7402), 222-227, 2012
53572012
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
MGI Langille, J Zaneveld, JG Caporaso, D McDonald, D Knights, ...
Nature biotechnology 31 (9), 814-821, 2013
51742013
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
JG Caporaso, CL Lauber, WA Walters, D Berg-Lyons, CA Lozupone, ...
Proceedings of the national academy of sciences 108 (Supplement 1), 4516-4522, 2011
50332011
PyNAST: a flexible tool for aligning sequences to a template alignment
JG Caporaso, K Bittinger, FD Bushman, TZ DeSantis, GL Andersen, ...
Bioinformatics 26 (2), 266-267, 2010
32062010
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
2618*2019
Soil bacterial and fungal communities across a pH gradient in an arable soil
J Rousk, E Bĺĺth, PC Brookes, CL Lauber, C Lozupone, JG Caporaso, ...
The ISME journal 4 (10), 1340-1351, 2010
23262010
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
NA Bokulich, S Subramanian, JJ Faith, D Gevers, JI Gordon, R Knight, ...
Nature methods 10 (1), 57-59, 2013
21542013
Cross-biome metagenomic analyses of soil microbial communities and their functional attributes
N Fierer, JW Leff, BJ Adams, UN Nielsen, ST Bates, CL Lauber, S Owens, ...
Proceedings of the National Academy of Sciences 109 (52), 21390-21395, 2012
11562012
Examining the global distribution of dominant archaeal populations in soil
ST Bates, D Berg-Lyons, JG Caporaso, WA Walters, R Knight, N Fierer
The ISME journal 5 (5), 908-917, 2011
9652011
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457-463, 2017
9632017
Moving pictures of the human microbiome
JG Caporaso, CL Lauber, EK Costello, D Berg-Lyons, A Gonzalez, ...
Genome biology 12 (5), 1-8, 2011
9312011
Defining seasonal marine microbial community dynamics
JA Gilbert, JA Steele, JG Caporaso, L Steinbrück, J Reeder, B Temperton, ...
The ISME journal 6 (2), 298-308, 2012
7852012
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
NA Bokulich, BD Kaehler, JR Rideout, M Dillon, E Bolyen, R Knight, ...
Microbiome 6 (1), 1-17, 2018
7702018
Cohabiting family members share microbiota with one another and with their dogs
SJ Song, C Lauber, EK Costello, CA Lozupone, G Humphrey, ...
elife 2, e00458, 2013
7692013
Current understanding of the human microbiome
JA Gilbert, MJ Blaser, JG Caporaso, JK Jansson, SV Lynch, R Knight
Nature medicine 24 (4), 392-400, 2018
6952018
Microbiota transfer therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study
DW Kang, JB Adams, AC Gregory, T Borody, L Chittick, A Fasano, ...
Microbiome 5 (1), 1-16, 2017
5912017
Using QIIME to analyze 16S rRNA gene sequences from microbial communities
J Kuczynski, J Stombaugh, WA Walters, A González, JG Caporaso, ...
Current protocols in bioinformatics 36 (1), 10.7. 1-10.7. 20, 2011
5712011
Best practices for analysing microbiomes
R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ...
Nature Reviews Microbiology 16 (7), 410-422, 2018
5612018
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