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idoia ochoa
Tytuł
Cytowane przez
Cytowane przez
Rok
Deepzip: Lossless data compression using recurrent neural networks
M Goyal, K Tatwawadi, S Chandak, I Ochoa
arXiv preprint arXiv:1811.08162, 2018
882018
SPRING: a next-generation compressor for FASTQ data
S Chandak, K Tatwawadi, I Ochoa, M Hernaez, T Weissman
Bioinformatics 35 (15), 2674-2676, 2019
842019
Effect of lossy compression of quality scores on variant calling
I Ochoa, M Hernaez, R Goldfeder, T Weissman, E Ashley
Briefings in bioinformatics 18 (2), 183-194, 2017
842017
QVZ: lossy compression of quality values
G Malysa, M Hernaez, I Ochoa, M Rao, K Ganesan, T Weissman
Bioinformatics 31 (19), 3122-3129, 2015
822015
QualComp: a new lossy compressor for quality scores based on rate distortion theory
I Ochoa, H Asnani, D Bharadia, M Chowdhury, T Weissman, G Yona
BMC bioinformatics 14, 1-16, 2013
682013
FaStore: a space-saving solution for raw sequencing data
Ł Roguski, I Ochoa, M Hernaez, S Deorowicz
Bioinformatics 34 (16), 2748-2756, 2018
552018
Genomic data compression
M Hernaez, D Pavlichin, T Weissman, I Ochoa
Annual Review of Biomedical Data Science 2, 19-37, 2019
512019
iDoComp: a compression scheme for assembled genomes
I Ochoa, M Hernaez, T Weissman
Bioinformatics 31 (5), 626-633, 2014
512014
DZip: Improved general-purpose loss less compression based on novel neural network modeling
M Goyal, K Tatwawadi, S Chandak, I Ochoa
2021 Data Compression Conference (DCC), 153-162, 2021
432021
Reference based genome compression
BG Chern, I Ochoa, A Manolakos, A No, K Venkat, T Weissman
2012 IEEE Information Theory Workshop, 427-431, 2012
412012
CaMoDi: a new method for cancer module discovery
A Manolakos, I Ochoa, K Venkat, AJ Goldsmith, O Gevaert
BMC genomics 15, 1-10, 2014
232014
An introduction to MPEG-G, the new ISO standard for genomic information representation
C Alberti, T Paridaens, J Voges, D Naro, JJ Ahmad, M Ravasi, D Renzi, ...
bioRxiv, 426353, 2018
202018
Aligned genomic data compression via improved modeling
I Ochoa, M Hernaez, T Weissman
Journal of bioinformatics and computational biology 12 (06), 1442002, 2014
202014
GTRAC: fast retrieval from compressed collections of genomic variants
K Tatwawadi, M Hernaez, I Ochoa, T Weissman
Bioinformatics 32 (17), i479-i486, 2016
192016
A cluster-based approach to compression of quality scores
M Hernaez, I Ochoa, T Weissman
2016 Data Compression Conference (DCC), 261-270, 2016
162016
Denoising of aligned genomic data
I Fischer-Hwang, I Ochoa, T Weissman, M Hernaez
Scientific reports 9 (1), 15067, 2019
152019
ENANO: Encoder for NANOpore FASTQ files
G Dufort y Álvarez, G Seroussi, P Smircich, J Sotelo, I Ochoa, Á Martín
Bioinformatics 36 (16), 4506-4507, 2020
142020
RENANO: a REference-based compressor for NANOpore FASTQ files
G Dufort y Álvarez, G Seroussi, P Smircich, J Sotelo-Silveira, I Ochoa, ...
Bioinformatics 37 (24), 4862-4864, 2021
122021
GeneComp, a new reference-based compressor for SAM files
R Long, M Hernaez, I Ochoa, T Weissman
2017 Data Compression Conference (DCC), 330-339, 2017
102017
LDPC codes for non-uniform memoryless sources and unequal energy allocation
I Ochoa, PM Crespo, M Hernaez
IEEE communications letters 14 (9), 794-796, 2010
102010
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