Melissa Cline
Melissa Cline
Associate Research Scientist, UC Santa Cruz Genomics Institute
Verified email at
Cited by
Cited by
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
Integration of biological networks and gene expression data using Cytoscape
MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ...
Nature protocols 2 (10), 2366-2382, 2007
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
The UCSC genome browser database: update 2011
PA Fujita, B Rhead, AS Zweig, AS Hinrichs, D Karolchik, MS Cline, ...
Nucleic acids research 39 (suppl_1), D876-D882, 2010
The UCSC Genome Browser database: extensions and updates 2013
LR Meyer, AS Zweig, AS Hinrichs, D Karolchik, RM Kuhn, M Wong, ...
Nucleic acids research 41 (D1), D64-D69, 2012
The UCSC genome browser database: 2014 update
D Karolchik, GP Barber, J Casper, H Clawson, MS Cline, M Diekhans, ...
Nucleic acids research 42 (D1), D764-D770, 2014
NetAffx: Affymetrix probesets and annotations
G Liu, AE Loraine, R Shigeta, M Cline, J Cheng, V Valmeekam, S Sun, ...
Nucleic acids research 31 (1), 82-86, 2003
The UCSC genome browser database: 2008 update
D Karolchik, RM Kuhn, R Baertsch, GP Barber, H Clawson, M Diekhans, ...
Nucleic acids research 36 (suppl_1), D773-D779, 2007
Nova regulates brain-specific splicing to shape the synapse
J Ule, A Ule, J Spencer, A Williams, JS Hu, M Cline, H Wang, T Clark, ...
Nature genetics 37 (8), 844-852, 2005
Toil enables reproducible, open source, big biomedical data analyses
J Vivian, AA Rao, FA Nothaft, C Ketchum, J Armstrong, A Novak, J Pfeil, ...
Nature biotechnology 35 (4), 314-316, 2017
The UCSC Genome Browser database: extensions and updates 2011
TR Dreszer, D Karolchik, AS Zweig, AS Hinrichs, BJ Raney, RM Kuhn, ...
Nucleic acids research 40 (D1), D918-D923, 2012
RBPmap: a web server for mapping binding sites of RNA-binding proteins
I Paz, I Kosti, M Ares Jr, M Cline, Y Mandel-Gutfreund
Nucleic acids research 42 (W1), W361-W367, 2014
An encyclopedia of mouse DNA elements (Mouse ENCODE)
JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, T Gingeras, ...
Genome biology 13 (8), 1-5, 2012
Aberrant alternative splicing and extracellular matrix gene expression in mouse models of myotonic dystrophy
H Du, MS Cline, RJ Osborne, DL Tuttle, TA Clark, JP Donohue, MP Hall, ...
Nature structural & molecular biology 17 (2), 187-193, 2010
ENCODE whole-genome data in the UCSC Genome Browser: update 2012
KR Rosenbloom, TR Dreszer, JC Long, VS Malladi, CA Sloan, BJ Raney, ...
Nucleic acids research 40 (D1), D912-D917, 2012
Muscleblind-like 2-mediated alternative splicing in the developing brain and dysregulation in myotonic dystrophy
K Charizanis, KY Lee, R Batra, M Goodwin, C Zhang, Y Yuan, L Shiue, ...
Neuron 75 (3), 437-450, 2012
The UCSC cancer genomics browser: update 2015
M Goldman, B Craft, T Swatloski, M Cline, O Morozova, M Diekhans, ...
Nucleic acids research 43 (D1), D812-D817, 2015
Integrated molecular characterization of uterine carcinosarcoma
AD Cherniack, H Shen, V Walter, C Stewart, BA Murray, R Bowlby, X Hu, ...
Cancer cell 31 (3), 411-423, 2017
Exploring TCGA pan-cancer data at the UCSC cancer genomics browser
MS Cline, B Craft, T Swatloski, M Goldman, S Ma, D Haussler, J Zhu
Scientific reports 3 (1), 1-6, 2013
Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry
R Karchin, M Cline, Y Mandel‐Gutfreund, K Karplus
Proteins: Structure, Function, and Bioinformatics 51 (4), 504-514, 2003
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