Irina Tuszynska
Irina Tuszynska
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RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction
JA Cruz, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, S Cao, R Das, ...
Rna 18 (4), 610-625, 2012
NPDock: a web server for protein–nucleic acid docking
I Tuszynska, M Magnus, K Jonak, W Dawson, JM Bujnicki
Nucleic acids research 43 (W1), W425-W430, 2015
Computational methods for prediction of protein–RNA interactions
T Puton, L Kozlowski, I Tuszynska, K Rother, JM Bujnicki
Journal of structural biology 179 (3), 261-268, 2012
DARS-RNP and QUASI-RNP: new statistical potentials for protein-RNA docking
I Tuszynska, JM Bujnicki
BMC bioinformatics 12 (1), 1-16, 2011
The structure of M. EcoKI Type I DNA methyltransferase with a DNA mimic antirestriction protein
CK Kennaway, A Obarska-Kosinska, JH White, I Tuszynska, LP Cooper, ...
Nucleic acids research 37 (3), 762-770, 2009
Predicting atomic details of the unfolding pathway for YibK, a knotted protein from the SPOUT superfamily
I Tuszynska, JM Bujnicki
Journal of Biomolecular Structure and Dynamics 27 (4), 511-520, 2010
Endothelial cell differentiation is encompassed by changes in long range interactions between inactive chromatin regions
H Niskanen, I Tuszynska, R Zaborowski, M Heinäniemi, S Ylä-Herttuala, ...
Nucleic acids research 46 (4), 1724-1740, 2018
Crystal structures of the tRNA:m 2 G6 methyltransferase Trm14/TrmN from two domains of life
M Fislage, M Roovers, I Tuszynska, JM Bujnicki, L Droogmans, ...
Nucleic acids research 40 (11), 5149-5161, 2012
PROTMAP2D: visualization, comparison and analysis of 2D maps of protein structure
MJ Pietal, I Tuszynska, JM Bujnicki
Bioinformatics 23 (11), 1429-1430, 2007
THUMP from archaeal tRNA:m 22 G10 methyltransferase, a genuine autonomously folding domain
G Gabant, S Auxilien, I Tuszynska, M Locard, MJ Gajda, G Chaussinand, ...
Nucleic acids research 34 (9), 2483-2494, 2006
Computational modeling of protein–RNA complex structures
I Tuszynska, D Matelska, M Magnus, G Chojnowski, JM Kasprzak, ...
Methods 65 (3), 310-319, 2014
Sequence-specific cleavage of the RNA strand in DNA–RNA hybrids by the fusion of ribonuclease H with a zinc finger
AA Sulej, I Tuszynska, KJ Skowronek, M Nowotny, JM Bujnicki
Nucleic acids research 40 (22), 11563-11570, 2012
FILTREST3D: discrimination of structural models using restraints from experimental data
MJ Gajda, I Tuszynska, M Kaczor, AY Bakulina, JM Bujnicki
Bioinformatics 26 (23), 2986-2987, 2010
Novel inhibitors of the rRNA ErmC'methyltransferase to block resistance to macrolides, lincosamides, streptogramine B antibiotics
IP Foik, I Tuszynska, M Feder, E Purta, F Stefaniak, JM Bujnicki
European Journal of Medicinal Chemistry 146, 60-67, 2018
Modeling of protein–RNA complex structures using computational docking methods
B Madan, JM Kasprzak, I Tuszynska, M Magnus, K Szczepaniak, ...
Computational Design of Ligand Binding Proteins, 353-372, 2016
HiCEnterprise: identifying long range chromosomal contacts in Hi-C data
H Kranas, I Tuszynska, B Wilczynski
PeerJ 9, e10558, 2021
Black chromatin is indispensable for accurate simulations of Drosophila melanogaster chromatin structure.
I Tuszynska, P Bednarz, B Wilczynski
bioRxiv, 2021
Novel inhibitors of ErmC’methyltransferase responsible for resistance to MLSB antibiotics
IP Domagala, I Tuszynska, M Feder, X Lucas, KH Kaminska, E Purta, ...
FEBS JOURNAL 281, 43-44, 2014
Engineered'restriction RNases' for sequence-specific cleavage of dsRNA and RNA in DNA-RNA hybrids
JM Bujnicki, AA Sulej, D Pianka, I Tuszynska, J Czarnecka, KJ Skowronek, ...
FEBS JOURNAL 280, 30-30, 2013
AA Sulej, D G³ów, J Czarnecka, D Pianka, G Chojnowski, I Tuszynska, ...
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