| Genetic and transcriptional evolution alters cancer cell line drug response U Ben-David, B Siranosian, G Ha, H Tang, Y Oren, K Hinohara, ... Nature 560 (7718), 325-330, 2018 | 808 | 2018 |
| A bioinformatic analysis of integrative mobile genetic elements highlights their role in bacterial adaptation MG Durrant, MM Li, BA Siranosian, SB Montgomery, AS Bhatt Cell host & microbe 27 (1), 140-153. e9, 2020 | 144 | 2020 |
| Reorganization of chromosome architecture in replicative cellular senescence SW Criscione, M De Cecco, B Siranosian, Y Zhang, JA Kreiling, ... Science advances 2 (2), e1500882, 2016 | 143 | 2016 |
| Glucagon-like peptide 2 for intestinal stem cell and Paneth cell repair during graft-versus-host disease in mice and humans J Norona, P Apostolova, D Schmidt, R Ihlemann, N Reischmann, G Taylor, ... Blood, The Journal of the American Society of Hematology 136 (12), 1442-1455, 2020 | 76 | 2020 |
| Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages BA Siranosian, FB Tamburini, G Sherlock, AS Bhatt Nature communications 11 (1), 280, 2020 | 64 | 2020 |
| Rare transmission of commensal and pathogenic bacteria in the gut microbiome of hospitalized adults BA Siranosian, EF Brooks, T Andermann, AR Rezvani, N Banaei, H Tang, ... Nature communications 13 (1), 586, 2022 | 32 | 2022 |
| Reflections on a journey: a retrospective of the ISCB Student Council symposium series M Hassan, AA Namasivayam, D DeBlasio, N Fatima, B Siranosian, ... BMC bioinformatics 19, 1-8, 2018 | 17 | 2018 |
| Microbiota dynamics in a randomized trial of gut decontamination during allogeneic hematopoietic cell transplantation CJ Severyn, BA Siranosian, STJ Kong, A Moreno, MM Li, N Chen, ... JCI insight 7 (7), 2022 | 14 | 2022 |
| A compilation of fecal microbiome shotgun metagenomics from hematopoietic cell transplantation patients J Yan, C Liao, BP Taylor, E Fontana, LA Amoretti, RJ Wright, ER Littmann, ... Scientific Data 9 (1), 219, 2022 | 12 | 2022 |
| Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly JB Kang, BA Siranosian, EL Moss, N Banaei, TM Andermann, AS Bhatt BMC bioinformatics 20, 1-13, 2019 | 10 | 2019 |
| Whole‐blood dysregulation of actin‐cytoskeleton pathway in adult spinal muscular atrophy patients JJ Siranosian, FC Nery, CRR Alves, BA Siranosian, NJ Lyons, ... Annals of Clinical and Translational Neurology 7 (7), 1158-1165, 2020 | 9 | 2020 |
| Reorganization of chromosome architecture in replicative cellular senescence. Sci Adv. 2016; 2: e1500882 SW Criscione, M De Cecco, B Siranosian, Y Zhang, JA Kreiling, ... | 9 | |
| A phase 2 study of the LSD1 inhibitor bomedemstat (IMG-7289) for the treatment of advanced myelofibrosis (MF): updated results and genomic analyses KM Pettit, H Gill, A Yacoub, T Bradley, AT Gerds, M Tatarczuch, J Shortt, ... Blood 140 (Supplement 1), 9717-9720, 2022 | 8 | 2022 |
| Human β-defensin 2 ameliorates acute GVHD by limiting ileal neutrophil infiltration and restraining T cell receptor signaling T Rückert, G Andrieux, M Boerries, K Hanke-Müller, NM Woessner, ... Science Translational Medicine 14 (676), eabp9675, 2022 | 5 | 2022 |
| Tetranucleotide usage highlights genomic heterogeneity among mycobacteriophages B Siranosian, S Perera, E Williams, C Ye, C de Graffenried, P Shank F1000Research 4, 2015 | 5 | 2015 |
| Mobile genetic element insertions drive antibiotic resistance across pathogens MG Durrant, MM Li, B Siranosian, AS Bhatt BioRxiv, 527788, 2019 | 4 | 2019 |
| The TaxUMAP atlas: Efficient display of large clinical microbiome data reveals ecological competition in protection against bacteremia J Schluter, A Djukovic, BP Taylor, J Yan, C Duan, GA Hussey, C Liao, ... Cell Host & Microbe 31 (7), 1126-1139. e6, 2023 | 3 | 2023 |
| Tetranucleotide usage in mycobacteriophage genomes: alignment-free methods to cluster phage and infer evolutionary relationships B Siranosian, E Herold, E Williams, C Ye, C de Graffenried BMC Bioinformatics 16, 1-2, 2015 | 2 | 2015 |
| Read cloud sequencing elucidates microbiome dynamics in a hematopoietic cell transplant patient J Kang, B Siranosian, E Moss, T Andermann, A Bhatt 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2018 | 1 | 2018 |
| S230: HUMAN ΒETA-DEFENSIN 2 TREATMENT MODULATES THE INTESTINAL MICROBIOME AND THE ALLOGENEIC T CELL RESPONSE TO LIMIT ACUTE GRAFT-VERSUS-HOST DISEASE T Rückert, G Andrieux, M Boerries, NM Woessner, S Minguet, S Doetsch, ... HemaSphere 6, 131-132, 2022 | | 2022 |
