Stefan Hellander
Cytowane przez
Cytowane przez
Reaction-diffusion master equation in the microscopic limit
S Hellander, A Hellander, L Petzold
Physical Review E 85 (4), 042901, 2012
Stochastic simulation service: bridging the gap between the computational expert and the biologist
B Drawert, A Hellander, B Bales, D Banerjee, G Bellesia, BJ Daigle Jr, ...
PLoS computational biology 12 (12), e1005220, 2016
Coupled mesoscopic and microscopic simulation of stochastic reaction-diffusion processes in mixed dimensions
A Hellander, S Hellander, P Lötstedt
Multiscale Modeling & Simulation 10 (2), 585-611, 2012
Reaction rates for mesoscopic reaction-diffusion kinetics
S Hellander, A Hellander, L Petzold
Physical Review E 91 (2), 023312, 2015
Convergence of methods for coupling of microscopic and mesoscopic reaction–diffusion simulations
MB Flegg, S Hellander, R Erban
Journal of Computational Physics 289, 1-17, 2015
Macromolecular crowding regulates the gene expression profile by limiting diffusion
M Golkaram, S Hellander, B Drawert, LR Petzold
PLoS computational biology 12 (11), e1005122, 2016
Flexible single molecule simulation of reaction–diffusion processes
S Hellander, P Lötstedt
Journal of Computational Physics 230 (10), 3948-3965, 2011
Reaction rates for a generalized reaction-diffusion master equation
S Hellander, L Petzold
Physical Review E 93 (1), 013307, 2016
A framework for discrete stochastic simulation on 3D moving boundary domains
B Drawert, S Hellander, M Trogdon, TM Yi, L Petzold
The Journal of chemical physics 145 (18), 184113, 2016
The role of chromatin density in cell population heterogeneity during stem cell differentiation
M Golkaram, J Jang, S Hellander, KS Kosik, LR Petzold
Scientific reports 7 (1), 1-11, 2017
Control over single-cell distribution of G1 lengths by WNT governs pluripotency
J Jang, D Han, M Golkaram, M Audouard, G Liu, D Bridges, S Hellander, ...
PLoS biology 17 (9), e3000453, 2019
Mesoscopic-microscopic spatial stochastic simulation with automatic system partitioning
S Hellander, A Hellander, L Petzold
The Journal of chemical physics 147 (23), 234101, 2017
Reaction rates for reaction-diffusion kinetics on unstructured meshes
S Hellander, L Petzold
The Journal of chemical physics 146 (6), 064101, 2017
Stochastic reaction–diffusion processes with embedded lower-dimensional structures
S Wang, J Elf, S Hellander, P Lötstedt
Bulletin of mathematical biology 76 (4), 819-853, 2014
Single molecule simulations in complex geometries with embedded dynamic one-dimensional structures
S Hellander
The Journal of Chemical Physics 139 (1), 07B601_1, 2013
A multiscale compartment-based model of stochastic gene regulatory networks using hitting-time analysis
A Coulier, S Hellander, A Hellander
The Journal of Chemical Physics 154 (18), 184105, 2021
Hierarchical algorithm for the reaction-diffusion master equation
S Hellander, A Hellander
The Journal of Chemical Physics 152 (3), 034104, 2020
A 3D multiscale model to explore the role of EGFR overexpression in tumourigenesis
A Bouchnita, S Hellander, A Hellander
Bulletin of mathematical biology 81 (7), 2323-2344, 2019
Efficient sampling in event-driven algorithms for reaction-diffusion processes
MH Bani-Hashemian, S Hellander, P Lötstedt
Communications in Computational Physics 13 (4), 958-984, 2013
Hierarchical Reaction-Diffusion Master Equation
S Hellander, A Hellander
arXiv preprint arXiv:1903.03181, 2019
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