Ivan G. Costa
Ivan G. Costa
Professor, Institute of Computational Genomics, RWTH Aachen
Verified email at rwth-aachen.de - Homepage
TitleCited byYear
Clustering cancer gene expression data: a comparative study
MCP de Souto, IG Costa, DSA de Araujo, TB Ludermir, A Schliep
BMC bioinformatics 9 (1), 497, 2008
3202008
Analyzing gene expression time-courses
A Schliep, IG Costa, C Steinhoff, A Schonhuth
IEEE/ACM Transactions on computational biology and bioinformatics 2 (3), 179-193, 2005
942005
On the selection of appropriate distances for gene expression data clustering
PA Jaskowiak, RJGB Campello, IG Costa
BMC bioinformatics 15 (2), S2, 2014
872014
CLEVER: clique-enumerating variant finder
T Marschall, IG Costa, S Canzar, M Bauer, GW Klau, A Schliep, ...
Bioinformatics 28 (22), 2875-2882, 2012
812012
Ranking and selecting clustering algorithms using a meta-learning approach
MCP De Souto, RBC Prudencio, RGF Soares, DSA De Araujo, IG Costa, ...
2008 IEEE International Joint Conference on Neural Networks (IEEE World …, 2008
692008
Comparative analysis of clustering methods for gene expression time course data
IG Costa, FAT de Carvalho, MCP de Souto
Genetics and Molecular Biology 27 (4), 623-631, 2004
682004
Therapeutic inhibition of inflammatory monocyte recruitment reduces steatohepatitis and liver fibrosis
O Krenkel, T Puengel, O Govaere, AT Abdallah, JC Mossanen, ...
Hepatology 67 (4), 1270-1283, 2018
672018
Analysis of computational footprinting methods for DNase sequencing experiments
EG Gusmao, M Allhoff, M Zenke, IG Costa
Nature methods 13 (4), 303, 2016
672016
A multiple kernel learning algorithm for drug-target interaction prediction
ACA Nascimento, RBC Prudêncio, IG Costa
BMC bioinformatics 17 (1), 46, 2016
652016
Human pluripotent stem cell-derived acinar/ductal organoids generate human pancreas upon orthotopic transplantation and allow disease modelling
M Hohwieler, A Illing, PC Hermann, T Mayer, M Stockmann, L Perkhofer, ...
Gut 66 (3), 473-486, 2017
612017
DNA methylation levels at individual age-associated CpG sites can be indicative for life expectancy
Q Lin, CI Weidner, IG Costa, RE Marioni, MRP Ferreira, IJ Deary, ...
Aging (Albany NY) 8 (2), 394, 2016
582016
Discovering motifs that induce sequencing errors
M Allhoff, A Schönhuth, M Martin, IG Costa, S Rahmann, T Marschall
BMC bioinformatics 14 (5), S1, 2013
562013
Impact of missing data imputation methods on gene expression clustering and classification
MCP De Souto, PA Jaskowiak, IG Costa
BMC bioinformatics 16 (1), 64, 2015
512015
Detection of active transcription factor binding sites with the combination of DNase hypersensitivity and histone modifications
EG Gusmao, C Dieterich, M Zenke, IG Costa
Bioinformatics 30 (22), 3143-3151, 2014
482014
The lncRNA HOTAIR impacts on mesenchymal stem cells via triple helix formation
M Kalwa, S Hänzelmann, S Otto, CC Kuo, J Franzen, S Joussen, ...
Nucleic acids research 44 (22), 10631-10643, 2016
472016
Constrained mixture estimation for analysis and robust classification of clinical time series
IG Costa, A Schönhuth, C Hafemeister, A Schliep
Bioinformatics 25 (12), i6-i14, 2009
432009
Replicative senescence is associated with nuclear reorganization and with DNA methylation at specific transcription factor binding sites
S Hänzelmann, F Beier, EG Gusmao, CM Koch, S Hummel, I Charapitsa, ...
Clinical epigenetics 7 (1), 19, 2015
422015
Comparative study on normalization procedures for cluster analysis of gene expression datasets
MCP de Souto, DSA de Araujo, IG Costa, RGF Soares, TB Ludermir, ...
2008 IEEE International Joint Conference on Neural Networks (IEEE World …, 2008
392008
Surface topography guides morphology and spatial patterning of induced pluripotent stem cell colonies
G Abagnale, A Sechi, M Steger, Q Zhou, CC Kuo, G Aydin, C Schalla, ...
Stem cell reports 9 (2), 654-666, 2017
372017
Proximity measures for clustering gene expression microarray data: a validation methodology and a comparative analysis
PA Jaskowiak, RJGB Campello, IG Costa Filho
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB) 10 …, 2013
372013
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Articles 1–20