| Absence of a simple code: how transcription factors read the genome M Slattery, T Zhou, L Yang, ACD Machado, R Gordân, R Rohs Trends in biochemical sciences 39 (9), 381-399, 2014 | 565 | 2014 |
| Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins M Slattery, T Riley, P Liu, N Abe, P Gomez-Alcala, I Dror, T Zhou, R Rohs, ... Cell 147 (6), 1270-1282, 2011 | 544 | 2011 |
| Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape R Gordân, N Shen, I Dror, T Zhou, J Horton, R Rohs, ML Bulyk Cell reports 3 (4), 1093-1104, 2013 | 346 | 2013 |
| DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale T Zhou, L Yang, Y Lu, I Dror, AC Dantas Machado, T Ghane, R Di Felice, ... Nucleic acids research 41 (W1), W56-W62, 2013 | 322 | 2013 |
| Quantitative modeling of transcription factor binding specificities using DNA shape T Zhou, N Shen, L Yang, N Abe, J Horton, RS Mann, HJ Bussemaker, ... Proceedings of the National Academy of Sciences 112 (15), 4654-4659, 2015 | 255 | 2015 |
| Probing DNA shape and methylation state on a genomic scale with DNase I A Lazarovici, T Zhou, A Shafer, AC Dantas Machado, TR Riley, ... Proceedings of the National Academy of Sciences 110 (16), 6376-6381, 2013 | 200 | 2013 |
| Deconvolving the recognition of DNA shape from sequence N Abe, I Dror, L Yang, M Slattery, T Zhou, HJ Bussemaker, R Rohs, ... Cell 161 (2), 307-318, 2015 | 195 | 2015 |
| DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding TP Chiu, F Comoglio, T Zhou, L Yang, R Paro, R Rohs Bioinformatics 32 (8), 1211-1213, 2016 | 152 | 2016 |
| TFBSshape: a motif database for DNA shape features of transcription factor binding sites L Yang, T Zhou, I Dror, A Mathelier, WW Wasserman, R Gordân, R Rohs Nucleic acids research 42 (D1), D148-D155, 2014 | 138 | 2014 |
| Evolving insights on how cytosine methylation affects protein–DNA binding AC Dantas Machado, T Zhou, S Rao, P Goel, C Rastogi, A Lazarovici, ... Briefings in functional genomics 14 (1), 61-73, 2015 | 137 | 2015 |
| GBshape: a genome browser database for DNA shape annotations TP Chiu, L Yang, T Zhou, BJ Main, SCJ Parker, SV Nuzhdin, TD Tullius, ... Nucleic acids research 43 (D1), D103-D109, 2015 | 62 | 2015 |
| Covariation between homeodomain transcription factors and the shape of their DNA binding sites I Dror, T Zhou, Y Mandel-Gutfreund, R Rohs Nucleic acids research 42 (1), 430-441, 2014 | 53 | 2014 |
| Analysis of genetic variation indicates DNA shape involvement in purifying selection X Wang, T Zhou, Z Wunderlich, MT Maurano, AH DePace, SV Nuzhdin, ... Molecular biology and evolution 35 (8), 1958-1967, 2018 | 18 | 2018 |
| Genes under positive selection in Mycobacterium tuberculosis Y Zhang, H Zhang, T Zhou, Y Zhong, Q Jin Computational Biology and Chemistry 35 (5), 319-322, 2011 | 15 | 2011 |
| 15 TFBSshape: a motif database for DNA shape features of transcription factor binding sites L Yang, I Dror, T Zhou, A Mathelier, WW Wasserman, R Gordân, R Rohs Journal of Biomolecular Structure and Dynamics 33 (sup1), 9-9, 2015 | 1 | 2015 |
| 28 GBshape: a genome browser database for DNA shape annotations TP Chiu, L Yang, T Zhou, BJ Main, SCJ Parker, SV Nuzhdin, TD Tullius, ... Journal of Biomolecular Structure and Dynamics 33 (sup1), 16-16, 2015 | | 2015 |
| 22 Evolving insights on how cytosine methylation affects protein-DNA binding S Rao, A Carolina Dantas Machado, T Zhou, C Rastogi, HJ Bussemaker, ... Journal of Biomolecular Structure and Dynamics 33 (sup1), 12-12, 2015 | | 2015 |
| Genome-wide Studies Reveal the Function and Evolution of DNA Shape T Zhou University of Southern California, 2014 | | 2014 |
| 373 Structural insights for HIV-1 therapeutic strategies targeting Vif T Passioura, H Suga, S Sarbajna, SC West, D Schraivogel, G Meister, ... | | |
Remo RohsProfessor and Chair of Quantitative and Computational Biology, University of Southern CaliforniaVerified email at usc.edu
