Daniel B Roche
Daniel B Roche
Tertiary Knowledge Manager, SOPHiA Genetics
Zweryfikowany adres z nespran.com - Strona główna
Cytowane przez
Cytowane przez
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
DisProt 7.0: a major update of the database of disordered proteins
D Piovesan, F Tabaro, I Mičetić, M Necci, F Quaglia, CJ Oldfield, ...
Nucleic acids research 45 (D1), D219-D227, 2017
IntFOLD: an integrated server for modelling protein structures and functions from amino acid sequences
LJ McGuffin, JD Atkins, BR Salehe, AN Shuid, DB Roche
Nucleic acids research 43 (W1), W169-W173, 2015
The ModFOLD4 server for the quality assessment of 3D protein models
LJ McGuffin, MT Buenavista, DB Roche
Nucleic acids research 41 (W1), W368-W372, 2013
The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding …
DB Roche, MT Buenavista, SJ Tetchner, LJ McGuffin
Nucleic acids research 39 (suppl_2), W171-W176, 2011
Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments
LJ McGuffin, DB Roche
Bioinformatics 26 (2), 182-188, 2010
Proteins and their interacting partners: An introduction to protein–ligand binding site prediction methods
DB Roche, DA Brackenridge, LJ McGuffin
International journal of molecular sciences 16 (12), 29829-29842, 2015
FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins
DB Roche, SJ Tetchner, LJ McGuffin
BMC bioinformatics 12 (1), 1-20, 2011
Improvement of 3D protein models using multiple templates guided by single-template model quality assessment
MT Buenavista, DB Roche, LJ McGuffin
Bioinformatics 28 (14), 1851-1857, 2012
The FunFOLD2 server for the prediction of protein–ligand interactions
DB Roche, MT Buenavista, LJ McGuffin
Nucleic acids research 41 (W1), W303-W307, 2013
Accurate template‐based modeling in CASP12 using the IntFOLD4‐TS, ModFOLD6, and ReFOLD methods
LJ McGuffin, AN Shuid, R Kempster, AHA Maghrabi, JO Nealon, ...
Proteins: Structure, Function, and Bioinformatics 86, 335-344, 2018
Body mass index and complications following major gastrointestinal surgery: a prospective, international cohort study and meta‐analysis
EuroSurg Collaborative, R Blanco‐Colino, S Lee, SK Kamarajah, P Vasko, ...
Colorectal Disease 20 (8), O215-O225, 2018
Automated tertiary structure prediction with accurate local model quality assessment using the intfold‐ts method
LJ McGuffin, DB Roche
Proteins: Structure, Function, and Bioinformatics 79 (S10), 137-146, 2011
FunFOLDQA: a quality assessment tool for protein-ligand binding site residue predictions
DB Roche, MT Buenavista, LJ McGuffin
PLoS One 7 (5), e38219, 2012
TAPO: A combined method for the identification of tandem repeats in protein structures
P Do Viet, DB Roche, AV Kajava
FEBS Letters 589 (19), 2611-2619, 2015
Assessing the Quality of Modelled 3D Protein Structures Using the ModFOLD Server
DB Roche, MT Buenavista, LJ McGuffin
Protein Structure Prediction, 83, 2014
The binding site distance test score: a robust method for the assessment of predicted protein binding sites
DB Roche, SJ Tetchner, LJ McGuffin
Bioinformatics 26 (22), 2920-2921, 2010
Functional analysis of Plasmodium falciparum subpopulations associated with artemisinin resistance in Cambodia
A Dwivedi, C Reynes, A Kuehn, DB Roche, N Khim, M Hebrard, ...
Malaria Journal 16, 1-17, 2017
Classification of β-hairpin repeat proteins
DB Roche, P Do Viet, A Bakulina, L Hirsh, SCE Tosatto, AV Kajava
Journal of structural biology 201 (2), 130-138, 2018
Predicting protein structures and structural annotation of proteomes - Encyclopedia of Biophysics
DB Roche, MT Buenavista, LJ McGuffin
Springer - Encyclopedia of Biophysics, 2012
Nie można teraz wykonać tej operacji. Spróbuj ponownie później.
Prace 1–20