| Biopython: freely available Python tools for computational molecular biology and bioinformatics PJA Cock, T Antao, JT Chang, BA Chapman, CJ Cox, A Dalke, I Friedberg, ... Bioinformatics 25 (11), 1422, 2009 | 2147 | 2009 |
| Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development S Bonn, RP Zinzen, C Girardot, EH Gustafson, A Perez-Gonzalez, ... Nature genetics 44 (2), 148, 2012 | 407 | 2012 |
| Applying dynamic Bayesian networks to perturbed gene expression data N Dojer, A Gambin, A Mizera, B Wilczyński, J Tiuryn BMC bioinformatics 7 (1), 249, 2006 | 195 | 2006 |
| BNFinder: exact and efficient method for learning Bayesian networks B Wilczyński, N Dojer Bioinformatics 25 (2), 286, 2009 | 95 | 2009 |
| Challenges for modeling global gene regulatory networks during development: Insights from Drosophila B Wilczynski, EEM Furlong Developmental biology 340 (2), 161-169, 2010 | 64 | 2010 |
| A specialized histone H1 variant is required for adaptive responses to complex abiotic stress and related DNA methylation in Arabidopsis K Rutowicz, M Puzio, J Halibart-Puzio, M Lirski, M Kotliński, MA Kroteń, ... Plant Physiology 169 (3), 2080-2101, 2015 | 59 | 2015 |
| Discovering regulatory binding-site modules using rule-based learning TR Hvidsten, B Wilczyński, A Kryshtafovych, J Tiuryn, J Komorowski, ... Genome research 15 (6), 856-866, 2005 | 54 | 2005 |
| Predicting Spatial and Temporal Gene Expression Using an Integrative Model of Transcription Factor Occupancy and Chromatin State B Wilczynski, YH Liu, ZX Yeo, EEM Furlong PLOS Computational Biology 8 (12), e1002798, 2012 | 52 | 2012 |
| Dynamic CRM occupancy reflects a temporal map of developmental progression B Wilczynski, EEM Furlong Molecular systems biology 6 (1), 2010 | 42 | 2010 |
| Arabidopsis SWI/SNF chromatin remodeling complex binds both promoters and terminators to regulate gene expression R Archacki, R Yatusevich, D Buszewicz, K Krzyczmonik, J Patryn, ... Nucleic acids research 45 (6), 3116-3129, 2017 | 28 | 2017 |
| BNFinder2: Faster Bayesian network learning and Bayesian classification N Dojer, P Bednarz, A Podsiadło, B Wilczyński Bioinformatics 29 (16), 2068-2070, 2013 | 28 | 2013 |
| Finding evolutionarily conserved cis-regulatory modules with a universal set of motifs B Wilczynski, N Dojer, M Patelak, J Tiuryn BMC bioinformatics 10 (1), 82, 2009 | 20 | 2009 |
| Endothelial cell differentiation is encompassed by changes in long range interactions between inactive chromatin regions H Niskanen, I Tuszynska, R Zaborowski, M Heinäniemi, S Ylä-Herttuala, ... Nucleic acids research 46 (4), 1724-1740, 2018 | 17 | 2018 |
| Optimally choosing PWM motif databases and sequence scanning approaches based on ChIP-seq data M Dabrowski, N Dojer, I Krystkowiak, B Kaminska, B Wilczynski BMC bioinformatics 16 (1), 140, 2015 | 14 | 2015 |
| Coordinated repression and activation of two transcriptional programs stabilizes cell fate during myogenesis L Ciglar, C Girardot, B Wilczyński, M Braun, EEM Furlong Development 141 (13), 2633-2643, 2014 | 14 | 2014 |
| Using local gene expression similarities to discover regulatory binding site modules B Wilczyński, T Hvidsten, A Kryshtafovych, J Tiuryn, J Komorowski, ... BMC bioinformatics 7 (1), 505, 2006 | 14 | 2006 |
| Genome-wide analysis of drosophila RBf2 protein highlights the diversity of RB family targets and possible role in regulation of ribosome biosynthesis Y Wei, SS Mondal, R Mouawad, B Wilczyński, RW Henry, DN Arnosti G3: Genes, Genomes, Genetics 5 (7), 1503-1515, 2015 | 11 | 2015 |
| Taking promoters out of enhancers in sequence based predictions of tissue-specific mammalian enhancers J Herman-Izycka, M Wlasnowolski, B Wilczynski BMC medical genomics 10 (1), 34, 2017 | 9 | 2017 |
| Active enhancer positions can be accurately predicted from chromatin marks and collective sequence motif data A Podsiadło, M Wrzesień, W Paja, W Rudnicki, B Wilczyński BMC systems biology 7 (6), S16, 2013 | 9 | 2013 |
| Regulatory network reconstruction using stochastic logical networks B Wilczyński, J Tiuryn Computational Methods in Systems Biology, 142-154, 2006 | 9 | 2006 |
Jerzy TiurynProfesor informatyki, Uniwersytet WarszawskiVerified email at mimuw.edu.pl
