Bartek Wilczynski

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Peter CockJames Hutton Institute (formerly known as the Scottish Crop Research Institute)Verified email at hutton.ac.uk
Iddo FriedbergAssociate Professor of Bioinformatics, Iowa State UniversityVerified email at iastate.edu
Tiago AntaoUniversity of MontanaVerified email at cam.ac.uk
Thomas HamelryckDpt. of computer science / Dpt. of biology, University of CopenhagenVerified email at binf.ku.dk
Eileen E FurlongGroup Leader, Head of Dept.: European Molecular Biology LaboratoryVerified email at embl.de
Jerzy TiurynProfesor informatyki, Uniwersytet WarszawskiVerified email at mimuw.edu.pl
Norbert DojerInstitute of Informatics, University of WarsawVerified email at mimuw.edu.pl
Cymon J. CoxCentro de Ciencias do Mar, Faro, PortugalVerified email at ualg.pt
Jeffrey T. ChangAssociate Professor of Integrative Biology & Pharmacology, University of Texas Health Science CenterVerified email at uth.tmc.edu
Charles Girardot, PhDEMBLVerified email at embl.de
Yad Ghavi-HelmPost-doc, EMBLVerified email at embl.de
Stefan BonnProfessor for Medical Systems Biology, UKE and ZMN HamburgVerified email at uke.de
Alexis Perez GonzalezManager of the Flow Cytometry Platform, University of MelbourneVerified email at unimelb.edu.au
Nicolas DelhommeResearcher, UPSC, Swedish University of Agricultural SciencesVerified email at slu.se
Robert ZinzenBIMSB - MDCVerified email at mdc-berlin.de
Ania GambinInstitute of Informatics University of WarsawVerified email at mimuw.edu.pl
Torgeir R. HvidstenProfessor, Norwegian University of Life SciencesVerified email at nmbu.no
Michal DabrowskiAssistant Professor, Nencki InstituteVerified email at nencki.gov.pl
Andrzej MizeraPost-doc, University of LuxembourgVerified email at uni.lu
Irina TuszynskaUniwersytet WarszawskiVerified email at mimuw.edu.pl

Bartek Wilczynski

Associate professor, Institute of Informatics, University of Warsaw

Verified email at mimuw.edu.pl - Homepage

Computational Biology Bioinformatics Regulatory genomics Compbio-mimuw-research-group #PTBI


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Biopython: freely available Python tools for computational molecular biology and bioinformatics PJA Cock, T Antao, JT Chang, BA Chapman, CJ Cox, A Dalke, I Friedberg, ... Bioinformatics 25 (11), 1422, 2009	4467	2009
Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development S Bonn, RP Zinzen, C Girardot, EH Gustafson, A Perez-Gonzalez, ... Nature genetics 44 (2), 148-156, 2012	571	2012
Applying dynamic Bayesian networks to perturbed gene expression data N Dojer, A Gambin, A Mizera, B Wilczyński, J Tiuryn BMC bioinformatics 7 (1), 249, 2006	223	2006
A specialized histone H1 variant is required for adaptive responses to complex abiotic stress and related DNA methylation in Arabidopsis K Rutowicz, M Puzio, J Halibart-Puzio, M Lirski, M Kotliński, MA Kroteń, ... Plant Physiology 169 (3), 2080-2101, 2015	120	2015
BNFinder: exact and efficient method for learning Bayesian networks B Wilczyński, N Dojer Bioinformatics 25 (2), 286, 2009	110	2009
Arabidopsis SWI/SNF chromatin remodeling complex binds both promoters and terminators to regulate gene expression R Archacki, R Yatusevich, D Buszewicz, K Krzyczmonik, J Patryn, ... Nucleic Acids Research 45 (6), 3116-3129, 2017	82	2017
Challenges for modeling global gene regulatory networks during development: Insights from Drosophila B Wilczynski, EEM Furlong Developmental biology 340 (2), 161-169, 2010	76	2010
Discovering regulatory binding-site modules using rule-based learning TR Hvidsten, B Wilczyński, A Kryshtafovych, J Tiuryn, J Komorowski, ... Genome research 15 (6), 856-866, 2005	61	2005
Predicting Spatial and Temporal Gene Expression Using an Integrative Model of Transcription Factor Occupancy and Chromatin State B Wilczynski, YH Liu, ZX Yeo, EEM Furlong PLOS Computational Biology 8 (12), e1002798, 2012	55	2012
Dynamic CRM occupancy reflects a temporal map of developmental progression B Wilczynski, EEM Furlong Molecular systems biology 6 (1), 2010	53	2010
Endothelial cell differentiation is encompassed by changes in long range interactions between inactive chromatin regions H Niskanen, I Tuszynska, R Zaborowski, M Heinäniemi, S Ylä-Herttuala, ... Nucleic acids research 46 (4), 1724-1740, 2018	46	2018
BNFinder2: Faster Bayesian network learning and Bayesian classification N Dojer, P Bednarz, A Podsiadło, B Wilczyński Bioinformatics 29 (16), 2068-2070, 2013	37	2013
Coordinated repression and activation of two transcriptional programs stabilizes cell fate during myogenesis L Ciglar, C Girardot, B Wilczyński, M Braun, EEM Furlong Development 141 (13), 2633-2643, 2014	24	2014
Finding evolutionarily conserved cis-regulatory modules with a universal set of motifs B Wilczynski, N Dojer, M Patelak, J Tiuryn BMC bioinformatics 10 (1), 82, 2009	24	2009
Biopython tutorial and cookbook J Chang, B Chapman, I Friedberg, T Hamelryck, M de Hoon, P Cock, ... Update, 15-19, 2010	22	2010
Mapping chromatin accessibility and active regulatory elements reveals pathological mechanisms in human gliomas K Stępniak, MA Machnicka, J Mieczkowski, A Macioszek, B Wojtaś, ... Nature Communications 12 (1), 3621, 2021	20	2021
Optimally choosing PWM motif databases and sequence scanning approaches based on ChIP-seq data M Dabrowski, N Dojer, I Krystkowiak, B Kaminska, B Wilczynski BMC bioinformatics 16 (1), 1-14, 2015	19	2015
Genome-Wide Analysis of Drosophila RBf2 Protein Highlights the Diversity of RB Family Targets and Possible Role in Regulation of Ribosome Biosynthesis Y Wei, SS Mondal, R Mouawad, B Wilczyński, RW Henry, DN Arnosti G3: Genes, Genomes, Genetics 5 (7), 1503-1515, 2015	19	2015
Using local gene expression similarities to discover regulatory binding site modules B Wilczyński, T Hvidsten, A Kryshtafovych, J Tiuryn, J Komorowski, ... BMC bioinformatics 7 (1), 505, 2006	16	2006
Coordinated expression and genetic polymorphisms in Grainyhead-like genes in human non-melanoma skin cancers A Kikulska, T Rausch, E Krzywinska, M Pawlak, B Wilczynski, V Benes, ... BMC cancer 18, 1-12, 2018	15	2018

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