Bartek Wilczynski
Bartek Wilczynski
Assistant professor, Institute of Informatics, University of Warsaw
Verified email at mimuw.edu.pl - Homepage
Title
Cited by
Cited by
Year
Biopython: freely available Python tools for computational molecular biology and bioinformatics
PJA Cock, T Antao, JT Chang, BA Chapman, CJ Cox, A Dalke, I Friedberg, ...
Bioinformatics 25 (11), 1422, 2009
21472009
Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development
S Bonn, RP Zinzen, C Girardot, EH Gustafson, A Perez-Gonzalez, ...
Nature genetics 44 (2), 148, 2012
4072012
Applying dynamic Bayesian networks to perturbed gene expression data
N Dojer, A Gambin, A Mizera, B Wilczyński, J Tiuryn
BMC bioinformatics 7 (1), 249, 2006
1952006
BNFinder: exact and efficient method for learning Bayesian networks
B Wilczyński, N Dojer
Bioinformatics 25 (2), 286, 2009
952009
Challenges for modeling global gene regulatory networks during development: Insights from Drosophila
B Wilczynski, EEM Furlong
Developmental biology 340 (2), 161-169, 2010
642010
A specialized histone H1 variant is required for adaptive responses to complex abiotic stress and related DNA methylation in Arabidopsis
K Rutowicz, M Puzio, J Halibart-Puzio, M Lirski, M Kotliński, MA Kroteń, ...
Plant Physiology 169 (3), 2080-2101, 2015
592015
Discovering regulatory binding-site modules using rule-based learning
TR Hvidsten, B Wilczyński, A Kryshtafovych, J Tiuryn, J Komorowski, ...
Genome research 15 (6), 856-866, 2005
542005
Predicting Spatial and Temporal Gene Expression Using an Integrative Model of Transcription Factor Occupancy and Chromatin State
B Wilczynski, YH Liu, ZX Yeo, EEM Furlong
PLOS Computational Biology 8 (12), e1002798, 2012
522012
Dynamic CRM occupancy reflects a temporal map of developmental progression
B Wilczynski, EEM Furlong
Molecular systems biology 6 (1), 2010
422010
Arabidopsis SWI/SNF chromatin remodeling complex binds both promoters and terminators to regulate gene expression
R Archacki, R Yatusevich, D Buszewicz, K Krzyczmonik, J Patryn, ...
Nucleic acids research 45 (6), 3116-3129, 2017
282017
BNFinder2: Faster Bayesian network learning and Bayesian classification
N Dojer, P Bednarz, A Podsiadło, B Wilczyński
Bioinformatics 29 (16), 2068-2070, 2013
282013
Finding evolutionarily conserved cis-regulatory modules with a universal set of motifs
B Wilczynski, N Dojer, M Patelak, J Tiuryn
BMC bioinformatics 10 (1), 82, 2009
202009
Endothelial cell differentiation is encompassed by changes in long range interactions between inactive chromatin regions
H Niskanen, I Tuszynska, R Zaborowski, M Heinäniemi, S Ylä-Herttuala, ...
Nucleic acids research 46 (4), 1724-1740, 2018
172018
Optimally choosing PWM motif databases and sequence scanning approaches based on ChIP-seq data
M Dabrowski, N Dojer, I Krystkowiak, B Kaminska, B Wilczynski
BMC bioinformatics 16 (1), 140, 2015
142015
Coordinated repression and activation of two transcriptional programs stabilizes cell fate during myogenesis
L Ciglar, C Girardot, B Wilczyński, M Braun, EEM Furlong
Development 141 (13), 2633-2643, 2014
142014
Using local gene expression similarities to discover regulatory binding site modules
B Wilczyński, T Hvidsten, A Kryshtafovych, J Tiuryn, J Komorowski, ...
BMC bioinformatics 7 (1), 505, 2006
142006
Genome-wide analysis of drosophila RBf2 protein highlights the diversity of RB family targets and possible role in regulation of ribosome biosynthesis
Y Wei, SS Mondal, R Mouawad, B Wilczyński, RW Henry, DN Arnosti
G3: Genes, Genomes, Genetics 5 (7), 1503-1515, 2015
112015
Taking promoters out of enhancers in sequence based predictions of tissue-specific mammalian enhancers
J Herman-Izycka, M Wlasnowolski, B Wilczynski
BMC medical genomics 10 (1), 34, 2017
92017
Active enhancer positions can be accurately predicted from chromatin marks and collective sequence motif data
A Podsiadło, M Wrzesień, W Paja, W Rudnicki, B Wilczyński
BMC systems biology 7 (6), S16, 2013
92013
Regulatory network reconstruction using stochastic logical networks
B Wilczyński, J Tiuryn
Computational Methods in Systems Biology, 142-154, 2006
92006
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Articles 1–20