| Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains AB Canelas, N Harrison, A Fazio, J Zhang, JP Pitkänen, J Van Den Brink, ... Nature communications 1 (1), 145, 2010 | 119 | 2010 |
| A novel strategy for selection and validation of reference genes in dynamic multidimensional experimental design in yeast A Cankorur-Cetinkaya, E Dereli, S Eraslan, E Karabekmez, D Dikicioglu, ... PloS one 7 (6), e38351, 2012 | 63 | 2012 |
| Biomass composition: the “elephant in the room” of metabolic modelling D Dikicioglu, B Kırdar, SG Oliver Metabolomics 11, 1690-1701, 2015 | 62 | 2015 |
| How yeast re-programmes its transcriptional profile in response to different nutrient impulses D Dikicioglu, E Karabekmez, B Rash, P Pir, B Kirdar, SG Oliver BMC systems biology 5, 1-16, 2011 | 47 | 2011 |
| Integration of metabolic modeling and phenotypic data in evaluation and improvement of ethanol production using respiration-deficient mutants of Saccharomyces cerevisiae D Dikicioglu, P Pir, ZI Onsan, KO Ulgen, B Kirdar, SG Oliver Applied and Environmental Microbiology 74 (18), 5809-5816, 2008 | 29 | 2008 |
| Improving functional annotation for industrial microbes: a case study with Pichia pastoris D Dikicioglu, V Wood, KM Rutherford, MD McDowall, SG Oliver Trends in biotechnology 32 (8), 396-399, 2014 | 28 | 2014 |
| Predicting complex phenotype–genotype interactions to enable yeast engineering: Saccharomyces cerevisiae as a model organism and a cell factory D Dikicioglu, P Pir, SG Oliver Biotechnology journal 8 (9), 1017-1034, 2013 | 20 | 2013 |
| Dynamic proteomic profiling of extra-embryonic endoderm differentiation in mouse embryonic stem cells CM Mulvey, C Schröter, L Gatto, D Dikicioglu, IB Fidaner, A Christoforou, ... Stem Cells 33 (9), 2712-2725, 2015 | 19 | 2015 |
| Enhancing the functionality of a microscale bioreactor system as an industrial process development tool for mammalian perfusion culture DJ Sewell, R Turner, R Field, W Holmes, R Pradhan, C Spencer, ... Biotechnology and Bioengineering 116 (6), 1315-1325, 2019 | 16 | 2019 |
| Extension of the yeast metabolic model to include iron metabolism and its use to estimate global levels of iron‐recruiting enzyme abundance from cofactor requirements D Dikicioglu, SG Oliver Biotechnology and Bioengineering 116 (3), 610-621, 2019 | 16 | 2019 |
| Computer-aided strategies for determining the amino acid composition of medium for Chinese hamster ovary cell-based biomanufacturing platforms B Traustason, M Cheeks, D Dikicioglu International journal of molecular sciences 20 (21), 5464, 2019 | 13 | 2019 |
| Metaheuristic approaches in biopharmaceutical process development data analysis N Gangadharan, R Turner, R Field, SG Oliver, N Slater, D Dikicioglu Bioprocess and biosystems engineering 42, 1399-1408, 2019 | 13 | 2019 |
| Handling variability and incompleteness of biological data by flexible nets: a case study for Wilson disease J Júlvez, D Dikicioglu, SG Oliver NPJ Systems Biology and Applications 4 (1), 7, 2018 | 13 | 2018 |
| Metabolic modeling to identify engineering targets for Komagataella phaffii: The effect of biomass composition on gene target identification A Cankorur‐Cetinkaya, D Dikicioglu, SG Oliver Biotechnology and Bioengineering 114 (11), 2605-2615, 2017 | 13 | 2017 |
| Yeast cells with impaired drug resistance accumulate glycerol and glucose D Dikicioglu, S Oc, BM Rash, WB Dunn, P Pir, DB Kell, B Kirdar, SG Oliver Molecular BioSystems 10 (1), 93-102, 2014 | 12 | 2014 |
| A heuristic approach to handling missing data in biologics manufacturing databases J Mante, N Gangadharan, DJ Sewell, R Turner, R Field, SG Oliver, ... Bioprocess and biosystems engineering 42, 657-663, 2019 | 11 | 2019 |
| Saccharomyces cerevisiae adapted to grow in the presence of low-dose rapamycin exhibit altered amino acid metabolism D Dikicioglu, E Dereli Eke, S Eraslan, SG Oliver, B Kirdar Cell Communication and Signaling 16, 1-13, 2018 | 11 | 2018 |
| Recombinant expression of insoluble enzymes in Escherichia coli: a systematic review of experimental design and its manufacturing implications S Mital, G Christie, D Dikicioglu Microbial Cell Factories 20, 1-20, 2021 | 10 | 2021 |
| Short-and long-term dynamic responses of the metabolic network and gene expression in yeast to a transient change in the nutrient environment D Dikicioglu, WB Dunn, DB Kell, B Kirdar, SG Oliver Molecular BioSystems 8 (6), 1760-1774, 2012 | 8 | 2012 |
| CLUSTERnGO: a user-defined modelling platform for two-stage clustering of time-series data IB Fidaner, A Cankorur-Cetinkaya, D Dikicioglu, B Kirdar, AT Cemgil, ... Bioinformatics 32 (3), 388-397, 2016 | 7 | 2016 |
