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Duygu Dikicioglu
Duygu Dikicioglu
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Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains
AB Canelas, N Harrison, A Fazio, J Zhang, JP Pitkänen, J Van Den Brink, ...
Nature communications 1 (1), 145, 2010
1192010
A novel strategy for selection and validation of reference genes in dynamic multidimensional experimental design in yeast
A Cankorur-Cetinkaya, E Dereli, S Eraslan, E Karabekmez, D Dikicioglu, ...
PloS one 7 (6), e38351, 2012
632012
Biomass composition: the “elephant in the room” of metabolic modelling
D Dikicioglu, B Kırdar, SG Oliver
Metabolomics 11, 1690-1701, 2015
622015
How yeast re-programmes its transcriptional profile in response to different nutrient impulses
D Dikicioglu, E Karabekmez, B Rash, P Pir, B Kirdar, SG Oliver
BMC systems biology 5, 1-16, 2011
472011
Integration of metabolic modeling and phenotypic data in evaluation and improvement of ethanol production using respiration-deficient mutants of Saccharomyces cerevisiae
D Dikicioglu, P Pir, ZI Onsan, KO Ulgen, B Kirdar, SG Oliver
Applied and Environmental Microbiology 74 (18), 5809-5816, 2008
292008
Improving functional annotation for industrial microbes: a case study with Pichia pastoris
D Dikicioglu, V Wood, KM Rutherford, MD McDowall, SG Oliver
Trends in biotechnology 32 (8), 396-399, 2014
282014
Predicting complex phenotype–genotype interactions to enable yeast engineering: Saccharomyces cerevisiae as a model organism and a cell factory
D Dikicioglu, P Pir, SG Oliver
Biotechnology journal 8 (9), 1017-1034, 2013
202013
Dynamic proteomic profiling of extra-embryonic endoderm differentiation in mouse embryonic stem cells
CM Mulvey, C Schröter, L Gatto, D Dikicioglu, IB Fidaner, A Christoforou, ...
Stem Cells 33 (9), 2712-2725, 2015
192015
Enhancing the functionality of a microscale bioreactor system as an industrial process development tool for mammalian perfusion culture
DJ Sewell, R Turner, R Field, W Holmes, R Pradhan, C Spencer, ...
Biotechnology and Bioengineering 116 (6), 1315-1325, 2019
162019
Extension of the yeast metabolic model to include iron metabolism and its use to estimate global levels of iron‐recruiting enzyme abundance from cofactor requirements
D Dikicioglu, SG Oliver
Biotechnology and Bioengineering 116 (3), 610-621, 2019
162019
Computer-aided strategies for determining the amino acid composition of medium for Chinese hamster ovary cell-based biomanufacturing platforms
B Traustason, M Cheeks, D Dikicioglu
International journal of molecular sciences 20 (21), 5464, 2019
132019
Metaheuristic approaches in biopharmaceutical process development data analysis
N Gangadharan, R Turner, R Field, SG Oliver, N Slater, D Dikicioglu
Bioprocess and biosystems engineering 42, 1399-1408, 2019
132019
Handling variability and incompleteness of biological data by flexible nets: a case study for Wilson disease
J Júlvez, D Dikicioglu, SG Oliver
NPJ Systems Biology and Applications 4 (1), 7, 2018
132018
Metabolic modeling to identify engineering targets for Komagataella phaffii: The effect of biomass composition on gene target identification
A Cankorur‐Cetinkaya, D Dikicioglu, SG Oliver
Biotechnology and Bioengineering 114 (11), 2605-2615, 2017
132017
Yeast cells with impaired drug resistance accumulate glycerol and glucose
D Dikicioglu, S Oc, BM Rash, WB Dunn, P Pir, DB Kell, B Kirdar, SG Oliver
Molecular BioSystems 10 (1), 93-102, 2014
122014
A heuristic approach to handling missing data in biologics manufacturing databases
J Mante, N Gangadharan, DJ Sewell, R Turner, R Field, SG Oliver, ...
Bioprocess and biosystems engineering 42, 657-663, 2019
112019
Saccharomyces cerevisiae adapted to grow in the presence of low-dose rapamycin exhibit altered amino acid metabolism
D Dikicioglu, E Dereli Eke, S Eraslan, SG Oliver, B Kirdar
Cell Communication and Signaling 16, 1-13, 2018
112018
Recombinant expression of insoluble enzymes in Escherichia coli: a systematic review of experimental design and its manufacturing implications
S Mital, G Christie, D Dikicioglu
Microbial Cell Factories 20, 1-20, 2021
102021
Short-and long-term dynamic responses of the metabolic network and gene expression in yeast to a transient change in the nutrient environment
D Dikicioglu, WB Dunn, DB Kell, B Kirdar, SG Oliver
Molecular BioSystems 8 (6), 1760-1774, 2012
82012
CLUSTERnGO: a user-defined modelling platform for two-stage clustering of time-series data
IB Fidaner, A Cankorur-Cetinkaya, D Dikicioglu, B Kirdar, AT Cemgil, ...
Bioinformatics 32 (3), 388-397, 2016
72016
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