| PairMotif: a new pattern-driven algorithm for planted (l, d) DNA motif search Q Yu, H Huo, Y Zhang, H Guo PLoS One 7 (10), e48442, 2012 | 49 | 2012 |
| An efficient algorithm for discovering motifs in large DNA data sets Q Yu, H Huo, X Chen, H Guo, JS Vitter, J Huan IEEE transactions on nanobioscience 14 (5), 535-544, 2015 | 21 | 2015 |
| An efficient exact algorithm for the motif stem search problem over large alphabets Q Yu, H Huo, JS Vitter, J Huan, Y Nekrich IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB) 12 …, 2015 | 14 | 2015 |
| An affinity propagation-based DNA motif discovery algorithm C Sun, H Huo, Q Yu, H Guo, Z Sun BioMed research international 2015, 2015 | 11 | 2015 |
| PairMotif+: a fast and effective algorithm for de novo motif discovery in DNA sequences Q Yu, H Huo, Y Zhang, H Guo, H Guo International journal of biological sciences 9 (4), 412, 2013 | 11 | 2013 |
| A data-aware FM-index H Huo, L Chen, H Zhao, JS Vitter, Y Nekrich, Q Yu 2015 Proceedings of the Seventeenth Workshop on Algorithm Engineering and …, 2014 | 10 | 2014 |
| A heuristic cluster-based em algorithm for the planted (l, d) problem Y Zhang, H Huo, Q Yu Journal of bioinformatics and computational biology 11 (04), 1350009, 2013 | 10 | 2013 |
| CS2A: a compressed suffix array-based method for short read alignment H Huo, Z Sun, S Li, JS Vitter, X Wang, Q Yu, J Huan Data Compression Conference (DCC), 2016, 271-278, 2016 | 9 | 2016 |
| PairMotifChIP: A Fast Algorithm for Discovery of Patterns Conserved in Large ChIP-seq Data Sets Q Yu, H Huo, D Feng BioMed research international 2016, 2016 | 7 | 2016 |
| An efficient motif finding algorithm for large DNA data sets Q Yu, H Huo, X Chen, H Guo, JS Vitter, J Huan Bioinformatics and Biomedicine (BIBM), 2014 IEEE International Conference on …, 2014 | 7 | 2014 |
| Algorithms Improving the Storage Efficiency of Deep Packet Inspection [J] Q YU, HW HUO Journal of Software 1, 012, 2011 | 7* | 2011 |
| Reference sequence selection for motif searches Q Yu, H Huo, R Zhao, D Feng, JS Vitter, J Huan Bioinformatics and Biomedicine (BIBM), 2015 IEEE International Conference on …, 2015 | 5 | 2015 |
| A MapReduce-based algorithm for motif search H Huo, S Lin, Q Yu, Y Zhang, V Stojkovic Parallel and Distributed Processing Symposium Workshops & PhD Forum (IPDPSW …, 2012 | 5 | 2012 |
| SMCis: An Effective Algorithm for Discovery of Cis-Regulatory Modules H Guo, H Huo, Q Yu PloS one 11 (9), e0162968, 2016 | 4 | 2016 |
| RefSelect: a reference sequence selection algorithm for planted (l, d) motif search Q Yu, H Huo, R Zhao, D Feng, JS Vitter, J Huan BMC bioinformatics 17 (9), 266, 2016 | 4 | 2016 |
| StemFinder: An efficient algorithm for searching motif stems over large alphabets Q Yu, H Huo, JS Vitter, J Huan, Y Nekrich Bioinformatics and Biomedicine (BIBM), 2013 IEEE International Conference on …, 2013 | 4 | 2013 |
| A novel fixed-position projection refinement algorithm for TFBS Identification Y ZHANG, H HUO, Q YU, HZ GUO Journal of Computers 36 (12), 2545-2559, 2013 | 3 | 2013 |
| Genetic optimization for(l, d)-motif discovery HW Huo, DD Guo, Q Yu, YP Zhang, W Niu Jisuanji Xuebao(Chinese Journal of Computers) 35 (7), 1429-1439, 2012 | 1 | 2012 |
| A random projection algorithm for motif search based on maximum clique refinement H Huo, Q Yu, W Niu China Sciencepaper/Zhongguo Keji Lunwen 8 (4), 342-349, 2013 | | 2013 |
| An algorithm for motif finding based on MapReduce H Huo, S Lin, Q Yu, Y Zhang China Sciencepaper/Zhongguo Keji Lunwen 7 (7), 2012 | | 2012 |
