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Dukka KC
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Year
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17, 1-19, 2016
4072016
Deep learning-based advances in protein structure prediction
SC Pakhrin, B Shrestha, B Adhikari, DB Kc
International journal of molecular sciences 22 (11), 5553, 2021
682021
Comparison of machine learning and deep learning models for network intrusion detection systems
N Thapa, Z Liu, DB Kc, B Gokaraju, K Roy
Future Internet 12 (10), 167, 2020
602020
RF-Phos: a novel general phosphorylation site prediction tool based on random forest
HD Ismail, A Jones, JH Kim, RH Newman, DB Kc
BioMed research international 2016, 2016
562016
DeepSuccinylSite: a deep learning based approach for protein succinylation site prediction
N Thapa, M Chaudhari, S McManus, K Roy, RH Newman, H Saigo, DB Kc
BMC bioinformatics 21, 1-10, 2020
532020
Recent advances in sequence-based protein structure prediction
DB Kc
Briefings in bioinformatics 18 (6), 1021-1032, 2017
532017
Protein side-chain packing problem: a maximum edge-weight clique algorithmic approach
KC Dukka Bahadur, E Tomita, J Suzuki, T Akutsu
Journal of bioinformatics and computational biology 3 (01), 103-126, 2005
462005
Point matching under non-uniform distortions and protein side chain packing based on an efficient maximum clique algorithm
DB KC, T Akutsu, E Tomita, T Seki, A Fujiyama
Genome Informatics 13, 143-152, 2002
402002
RF-GlutarySite: a random forest based predictor for glutarylation sites
HJ Al-Barakati, H Saigo, RH Newman, DB KC
Molecular omics 15 (3), 189-204, 2019
372019
Structure-based methods for computational protein functional site prediction
BKC Dukka
Computational and structural biotechnology journal 8 (11), e201308005, 2013
352013
Numerical and experimental investigation of hydrodynamics and light transfer in open raceway ponds at various algal cell concentrations and medium depths
H Amini, A Hashemisohi, L Wang, A Shahbazi, M Bikdash, KC Dukka, ...
Chemical Engineering Science 156, 11-23, 2016
342016
CNN-BLPred: a convolutional neural network based predictor for β-lactamases (BL) and their classes
C White, HD Ismail, H Saigo, DB Kc
BMC bioinformatics 18, 221-232, 2017
292017
RF-Hydroxysite: a random forest based predictor for hydroxylation sites
HD Ismail, RH Newman, D B KC
Molecular BioSystems 12 (8), 2427-2435, 2016
282016
DeepRMethylSite: a deep learning based approach for prediction of arginine methylation sites in proteins
M Chaudhari, N Thapa, K Roy, RH Newman, H Saigo, KC Dukka B
Molecular omics 16 (5), 448-454, 2020
222020
Multiple methods for protein side chain packing using maximum weight cliques
B JB, DB KC, E Tomita, T Akutsu
Genome Informatics 17 (1), 3-12, 2006
222006
The PFP and ESG protein function prediction methods in 2014: effect of database updates and ensemble approaches
IK Khan, Q Wei, S Chapman, DB Kc, D Kihara
GigaScience 4 (1), s13742-015-0083-4, 2015
212015
Improving protein succinylation sites prediction using embeddings from protein language model
S Pokharel, P Pratyush, M Heinzinger, RH Newman, DB Kc
Scientific reports 12 (1), 16933, 2022
202022
SymD webserver: a platform for detecting internally symmetric protein structures
CH Tai, R Paul, D Kc, JD Shilling, B Lee
Nucleic Acids Research 42 (W1), W296-W300, 2014
202014
Improving position-specific predictions of protein functional sites using phylogenetic motifs
KC Dukka Bahadur, DR Livesay
Bioinformatics 24 (20), 2308-2316, 2008
202008
An integrated growth kinetics and computational fluid dynamics model for the analysis of algal productivity in open raceway ponds
H Amini, L Wang, A Hashemisohi, A Shahbazi, M Bikdash, KC Dukka, ...
Computers and electronics in agriculture 145, 363-372, 2018
182018
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