Arrate Muñoz Barrutia

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Carlos Ortiz de SolorzanoFull Professor - CIMA - Universidad de NavarraVerified email at unav.es
Michael UnserProfessor, Biomedical Imaging Group, Ecole Polytechnique Fédérale de Lausanne (EPFL), SwitzerlandVerified email at epfl.ch
Estibaliz Gómez-de-MariscalPostdoc Henriques Lab, Instituto Gulbenkian de Ciência, Oeiras, PortugalVerified email at igc.gulbenkian.pt
JUAN JOSE VAQUEROProfessor, Universidad Carlos III de MadridVerified email at ing.uc3m.es
Ignacio Arganda-CarrerasIkerbasque Associate Researcher at University of the Basque Country and DIPCVerified email at ehu.eus
Mario CeresaJoint Research Center, European CommissionVerified email at ec.europa.eu
Thomas PengoDirector of Research Informatics, U of MinnesotaVerified email at umn.edu
PEDRO M. GORDALIZACenter for Biomedical Imaging (CIBM), Universidad Carlos III deVerified email at unil.ch
Javier J ZuluetaProfessor of Medicine, Chief, Pulmonary, Critical Care and Sleep Medicine, Mount Sinai MorningsideVerified email at mountsinai.org
Daniel SageBiomedical Imaging Group, Center for Imaging, EPFL, Lausanne, SwitzerlandVerified email at epfl.ch
DANIEL GARCIA GONZALEZUniversidad Carlos III de MadridVerified email at ing.uc3m.es
Carlos Oscar S. Sorzano (ORCID:000...National Center of Biotechnology (CSIC)Verified email at cnb.csic.es
Jan KybicFaculty of Electrical Engineering, Czech Technical University in PragueVerified email at fel.cvut.cz
Denis WirtzT.H. Smoot Professor of Engineering Science, Pathology, and Oncology; VP Research, Johns HopkinsVerified email at jhu.edu
Wei OuyangAssistant Professor, Science for Life Laboratory | KTH Royal Institute of Technology, StockholmVerified email at kth.se
Maria J. Ledesma-CarbayoFull Professor, Universidad Politécnica de MadridVerified email at upm.es

Arrate Muñoz Barrutia

Professor, Univ. Carlos III de Madrid; Instituto de Investigación Sanitaria Gregorio Marañón

Verified email at ing.uc3m.es - Homepage

image processing biomedical imaging microscopy radiology


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Combination strategies in multi-atlas image segmentation: Application to brain MR data X Artaechevarria, A Muñoz-Barrutia, C Ortiz-de-Solorzano Medical Imaging, IEEE Transactions on 28 (8), 1266-1277, 2009	635	2009
3D reconstruction of histological sections: Application to mammary gland tissue I Arganda‐Carreras, R Fernández‐González, A Muñoz‐Barrutia, ... Microscopy Research and Technique 73 (11), 1019-1029, 2010	582	2010
An objective comparison of cell-tracking algorithms V Ulman, M Maška, KEG Magnusson, O Ronneberger, C Haubold, ... Nature methods 14 (12), 1141-1152, 2017	471	2017
A benchmark for comparison of cell tracking algorithms M Maška, V Ulman, D Svoboda, P Matula, P Matula, C Ederra, A Urbiola, ... Bioinformatics 30 (11), 1609-1617, 2014	441	2014
Adiposoft: automated software for the analysis of white adipose tissue cellularity in histological sections M Galarraga, J Campión, A Muñoz-Barrutia, N Boqué, H Moreno, ... Journal of Lipid Research 53 (12), 2791-2796, 2012	320	2012
Comparing algorithms for automated vessel segmentation in computed tomography scans of the lung: the VESSEL12 study RD Rudyanto, S Kerkstra, EM van Rikxoort, C Fetita, PY Brillet, C Lefevre, ... Medical image analysis 18 (7), 1217-1232, 2014	157	2014
Least-squares image resizing using finite differences A Muñoz-Barrutia, T Blu, M Unser IEEE Trans. Image Process 10 (9), 1365-1378, 2001	154	2001
Automated neuromelanin imaging as a diagnostic biomarker for Parkinson's disease G Castellanos, MA Fernández‐Seara, O Lorenzo‐Betancor, ... Movement Disorders 30 (7), 945-952, 2015	148	2015
Characterization of three-dimensional cancer cell migration in mixed collagen-Matrigel scaffolds using microfluidics and image analysis M Anguiano, C Castilla, M Maška, C Ederra, R Peláez, X Morales, ... PloS one 12 (2), e0171417, 2017	144	2017
Segmentation and Shape Tracking of Whole Fluorescent Cells Based on the Chan-Vese Model M Maska, O Danek, S Garasa, A Rouzaut, A Muñoz-Barrutia, OS Carlos IEEE Transactions on Medical Imaging 32 (6), 995-1006, 2013	126	2013
DeepImageJ: A user-friendly environment to run deep learning models in ImageJ E Gomez-de-Mariscal, C Garcia-Lopez-de-Haro, W Ouyang, L Donati, ... Nature Methods 18, 1192-1195, 2021	107	2021
Continuous wavelet transform with arbitrary scales and O (N) complexity A Muñoz, R Ertlé, M Unser Signal processing 82 (5), 749-757, 2002	103	2002
ANHIR: automatic non-rigid histological image registration challenge J Borovec, J Kybic, I Arganda-Carreras, DV Sorokin, G Bueno, ... IEEE transactions on medical imaging 39 (10), 3042-3052, 2020	80	2020
Applications of Light Sheet Microscopy in Microdevices I Albert-Smet, A Marcos-Vidal, JJ Vaquero, M Desco, A Muñoz-Barrutia, ... Frontiers in Neuroanatomy 13, 1, 2019	65	2019
Quantification of lung damage in an elastase-induced mouse model of emphysema A Muñoz-Barrutia, M Ceresa, X Artaechevarria, LM Montuenga, ... Journal of Biomedical Imaging 2012, 5, 2012	63	2012
Segmentation of touching cell nuclei using a two-stage graph cut model O Daněk, P Matula, C Ortiz-de-Solórzano, A Muñoz-Barrutia, M Maška, ... Scandinavian Conference on Image Analysis, 410-419, 2009	63	2009
New Strategies for Echocardiographic Evaluation of Left Ventricular Function in a Mouse Model of Long-Term Myocardial Infarction C Benavides-Vallve, D Corbacho, O Iglesias-Garcia, B Pelacho, E Albiasu, ... PloS one 7 (7), e41691, 2012	61	2012
Evaluation of micro-CT for emphysema assessment in mice: comparison with non-radiological techniques X Artaechevarria, D Blanco, G de Biurrun, M Ceresa, D Pérez-Martín, ... European radiology 21 (5), 954-962, 2011	49	2011
Airway segmentation and analysis for the study of mouse models of lung disease using micro-CT X Artaechevarria, D Perez-Martin, M Ceresa, G de Biurrun, D Blanco, ... Physics in Medicine and Biology 54 (22), 7009, 2009	47	2009
Benchmarking of Image Registration Methods for Differently Stained Histological Slides J Borovec, A Munoz-Barrutia, J Kybic 2018 25th IEEE International Conference on Image Processing (ICIP), 3368-3372, 2018	46	2018

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