| Issues with SARS-CoV-2 sequencing data N De Maio, C Walker, R Borges, L Weilguny, G Slodkowicz, N Goldman | 148* | 2020 |
| Mutation rates and selection on synonymous mutations in SARS-CoV-2 N De Maio, CR Walker, Y Turakhia, R Lanfear, R Corbett-Detig, ... Genome biology and evolution 13 (5), evab087, 2021 | 111 | 2021 |
| Stability of SARS-CoV-2 phylogenies Y Turakhia, N De Maio, B Thornlow, L Gozashti, R Lanfear, CR Walker, ... PLoS genetics 16 (11), e1009175, 2020 | 105 | 2020 |
| A phylodynamic workflow to rapidly gain insights into the dispersal history and dynamics of SARS-CoV-2 lineages S Dellicour, K Durkin, SL Hong, B Vanmechelen, J Martí-Carreras, MS Gill, ... Molecular biology and evolution 38 (4), 1608-1613, 2021 | 94 | 2021 |
| Masking strategies for SARS-CoV-2 alignments N De Maio, C Walker, R Borges, L Weilguny, G Slodkowicz, N Goldman | 35 | 2020 |
| phastSim: efficient simulation of sequence evolution for pandemic-scale datasets N De Maio, W Boulton, L Weilguny, CR Walker, Y Turakhia, ... PLoS computational biology 18 (4), e1010056, 2022 | 16 | 2022 |
| Short-range template switching in great ape genomes explored using pair hidden Markov models CR Walker, A Scally, N De Maio, N Goldman PLoS Genetics 17 (3), e1009221, 2021 | 13 | 2021 |
| Private information leakage from single-cell count matrices CR Walker, X Li, M Chakravarthy, W Lounsbery-Scaife, YA Choi, R Singh, ... Cell, 2024 | | 2024 |
| Statistical analysis of short template switch mutations in human genomes C Walker | | 2022 |
